ArticleScientific reports2018
Genome-wide Identification, Classification, and Expression Pattern of Homeobox Gene Family in Brassica rapa under Various Stresses.
Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.
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30 citing papers in PubMed, 50 citations in OpenAlex.
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- Development and selection of stably expressed reference genes for expression normalization in Ribes odoratum under drought stress.Scientific reports · 2025Article
- Genome wide identification and characterization of EPFL genes and its potential association with male sterility in Brassica rapa.Scientific reports · 2025Article
- Genetic analysis of silique and seed traits in Brassica juncea (L.) Czern. under differential doses of nitrogen application.Scientific reports · 2025Article
- Evolutionary Insight and Expression Pattern of WUSCHEL-Related Homebox Genes ofFood science & nutrition · 2025Article
- ZF-HD gene family in rapeseed (Brassica napus L.): genome-wide identification, phylogeny, evolutionary expansion and expression analyses.BMC genomics · 2024Article
- Functional and regulatory diversity of homeobox-leucine zipper transcription factors BnaHB6 under dehydration and salt stress in Brassica napus L.Plant molecular biology · 2024Article
- Genome-wide analysis and expression profiling of the HD-ZIP gene family in kiwifruit.BMC genomics · 2024Article
- Genome-wide analysis of the KNOX gene family in Moso bamboo: insights into their role in promoting the rapid shoot growth.BMC plant biology · 2024Article
- Genome-Wide Identification and Expression Analysis ofInternational journal of molecular sciences · 2023Article
- Evolutionary Consequences of Functional and Regulatory Divergence of HD-Zip I Transcription Factors as a Source of Diversity in Protein Interaction Networks in Plants.Journal of molecular evolution · 2023Review
- Mapping of QTLs for morphophysiological and yield traits under water-deficit stress and well-watered conditions in maize.Frontiers in plant science · 2023Article
- Genome-Wide Identification, Expression, and Interaction Analysis of BEL-Like Homeodomain Gene Family in Peach.Biochemical genetics · 2022Article
- The Roles of BLH Transcription Factors in Plant Development and Environmental Response.International journal of molecular sciences · 2022Review
- Systematic analysis of HD-ZIP transcription factors in sesame genome and gene expression profiling of SiHD-ZIP class I entailing drought stress responses at early seedling stage.Molecular biology reports · 2022Article
- TheFrontiers in plant science · 2022Article
- Genome-Wide Analysis of the Homeobox Gene Family and Identification of Drought-Responsive Members inPlants (Basel, Switzerland) · 2021Article
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Authors and funding
8 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Homeobox (HB) genes are crucial for plant growth and development processes. They encode transcription factors and responses to various stresses, as reported by recent emerging evidence. In this study, a total of 113 BraHB genes were identified in Brassica rapa. On the basis of domain organization and phylogenetic analysis, the BraHBs were grouped into nine subclasses, in which homeobox leucine-zipper (HB LZP-III) showed the highest number of genes (28) compared to other subclasses. The BraHBs exhibited similarities in exon-intron organization and motif composition among the members of the same subclasses. The analysis revealed that HB-Knotted was more preferentially retained than any other subclass of BraHB. Furthermore, we evaluated the impact of whole-genome triplication on the evolution of BraHBs. In order to analyze the subgenomes of B. rapa, we identified 39 paralogous pairs for which synonymous substitution values were lower than 1.00 for further purifying selection. Finally, the expression patterns of BraHBs across six tissues expressed dynamic variations combined with their responses against multiple stresses. The current study provides brief information on the homeobox gene family in B. rapa. Our findings can serve as a reference for further functional analysis of BraHBs.
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