Evidence map›Paper›PMID 30389987›Full record

ArticleScientific reports2018

Structure of bacterial oligosaccharyltransferase PglB bound to a reactive LLO and an inhibitory peptide.

Maja Napiórkowska, Jérémy Boilevin, Tamis Darbre, Jean-Louis Reymond, Kaspar P Locher

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.9field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 42 citations in OpenAlex.

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  11. Cell-freeFrontiers in molecular biosciences · 2023
    Article
  12. Article
  13. Site-to-site cross-talk in OST-B glycosylation of hCEACAM1-IgV.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  14. Review
  15. Production of Vaccines Using Biological Conjugation.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Maja NapiórkowskaInstitute of Molecular Biology and Biophysics, ETH Zurich, Zurich, Switzerland.
Jérémy BoilevinDepartment of Chemistry and Biochemistry, University of Bern, Bern, Switzerland.
Tamis DarbreDepartment of Chemistry and Biochemistry, University of Bern, Bern, Switzerland.ORCID http://orcid.org/0000-0003-2098-8514
Jean-Louis ReymondDepartment of Chemistry and Biochemistry, University of Bern, Bern, Switzerland.ORCID http://orcid.org/0000-0003-2724-2942
Kaspar P LocherInstitute of Molecular Biology and Biophysics, ETH Zurich, Zurich, Switzerland. locher@mol.biol.ethz.ch.ORCID http://orcid.org/0000-0002-8207-2889
University of Bern · CHETH Zurich · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Oligosaccharyltransferase (OST) is a key enzyme of the N-glycosylation pathway, where it catalyzes the transfer of a glycan from a lipid-linked oligosaccharide (LLO) to an acceptor asparagine within the conserved sequon N-X-T/S. A previous structure of a ternary complex of bacterial single subunit OST, PglB, bound to a non-hydrolyzable LLO analog and a wild type acceptor peptide showed how both substrates bind and how an external loop (EL5) of the enzyme provided specific substrate-binding contacts. However, there was a relatively large separation of the substrates at the active site. Here we present the X-ray structure of PglB bound to a reactive LLO analog and an inhibitory peptide, revealing previously unobserved interactions in the active site. We found that the atoms forming the N-glycosidic bond (C-1 of the GlcNAc moiety of LLO and the -NH

Indexed as

Bacterial ProteinsCampylobacter lariCrystallography, X-RayHexosyltransferasesLipopolysaccharidesMembrane ProteinsModels, MolecularPeptidesProtein BindingRecombinant ProteinsBacterial Proteinsdolichyl-diphosphooligosaccharide - protein glycotransferaseHexosyltransferaseslipid-linked oligosaccharidesLipopolysaccharidesMembrane ProteinsPeptidesRecombinant Proteins

Identifiers

PMID30389987
PMCPMC6215017
OpenAlexW2899504765

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.