Evidence map›Paper›PMID 30389958›Full record

ArticleScientific reports2018

X-linked ADGRG2 mutation and obstructive azoospermia in a large Pakistani family.

Muhammad Jaseem Khan, Nijole Pollock, Huaiyang Jiang, Carlos Castro, Rubina Nazli, Jawad Ahmed, Sulman Basit, Aleksandar Rajkovic, Alexander N Yatsenko

Open access · goldAbstract readCase Reports
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
5.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 39 citations in OpenAlex.

  1. Review
  2. Adhesion G protein-coupled receptors.Pharmacological reviews · 2026
    Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Review
  8. Genetics of Azoospermia.International journal of molecular sciences · 2021
    Review
  9. Review
  10. Review
  11. The Indian journal of medical research · 2020
    Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Genetic defects in human azoospermia.Basic and clinical andrology · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 3 countries.

Muhammad Jaseem KhanInstitute of Basic Medical Sciences, Khyber Medical University, Peshawar, Pakistan.
Nijole PollockDepartment of OBGYN and Reproductive Sciences, Magee-Womens Research Institute, School of Medicine, University of Pittsburgh, Pittsburgh, PA, USA.
Huaiyang JiangDepartment of OBGYN and Reproductive Sciences, Magee-Womens Research Institute, School of Medicine, University of Pittsburgh, Pittsburgh, PA, USA.
Carlos CastroDepartment of OBGYN and Reproductive Sciences, Magee-Womens Research Institute, School of Medicine, University of Pittsburgh, Pittsburgh, PA, USA.
Rubina NazliInstitute of Basic Medical Sciences, Khyber Medical University, Peshawar, Pakistan.
Jawad AhmedInstitute of Basic Medical Sciences, Khyber Medical University, Peshawar, Pakistan.
Sulman BasitCenter for Genetics and Inherited Diseases, Taibah University, Almadina Almunawarrah, Medina, Saudi Arabia.
Aleksandar RajkovicDepartment of OBGYN and Reproductive Sciences, Magee-Womens Research Institute, School of Medicine, University of Pittsburgh, Pittsburgh, PA, USA.
Alexander N YatsenkoDepartment of OBGYN and Reproductive Sciences, Magee-Womens Research Institute, School of Medicine, University of Pittsburgh, Pittsburgh, PA, USA. yatsenkoan@mwri.magee.edu.
University of Pittsburgh · USKhyber Medical University · PKTaibah University · SAUniversity of California, San Francisco · US

Funding

Genomic Basis of Premature Ovarian InsufficiencyR01HD070647 · NICHD · MAGEE-WOMEN'S RES INST AND FOUNDATION · PI RAJKOVIC, ALEKSANDAR · 2012 to 2016
$2.6M
Genomic signatures of X-linked and autosomal candidate-genes in azoospermiaR21HD080755 · NICHD · MAGEE-WOMEN'S RES INST AND FOUNDATION · PI YATSENKO, ALEXANDER N · 2015 to 2016
$448k
NICHD NIH HHS R01 HD070647NICHD NIH HHS R21 HD080755
6 · The paper itself

Abstract

We performed whole exome sequencing to identify an unknown genetic cause of azoospermia and male infertility in a large Pakistani family. Three infertile males were subjected to semen analysis, hormone testing, testicular histology, ultrasonography, karyotyping, Y-chromosome microdeletion and CFTR testing. The clinical testing suggested a diagnosis of obstructive azoospermia (OA). To identify the cause, we performed whole exome sequencing (WES) for 2 infertile brothers and 2 fertile family members. For segregation analysis and variant confirmation, we performed Sanger sequencing. WES data analysis of the family revealed segregated variants in 3 candidate genes. We considered novel nonsense variant c.2440C > T(p.Arg814*) in X-linked gene ADGRG2 as biologically most plausible. It is predicted to truncate the protein by 204 amino acids (aa) at a key transmembrane domain. Adgrg2-knockout male mice show sperm loss due to obstructive fluid stasis, while ADGRG2 mutations cause OA in the infertile male patients. Our analysis of testicular histology reveals secondary severe reduction of spermatogenesis, consistent with human and knockout mouse phenotypes. The ADGRG2 nonsense mutation is absent in the largest population databases, ExAC and gnomAD. Analysis of the novel nonsense mutation in extended family members confirmed co-segregation of the mutation with OA in all affected males. The likely pathogenic nature of the mutation is supported by its truncation effect on the transmembrane domain and distinctive ultrasound results. The study demonstrates effectiveness of WES in discovering a genetic cause of azoospermia.

Indexed as

AdultAnimalsAtaxin-7AzoospermiaCodon, NonsenseDisease Models, AnimalDNA Mutational AnalysisExome SequencingGenes, X-LinkedHumansMaleMiceMice, KnockoutPakistanReceptors, G-Protein-CoupledSemen AnalysisADGRG2 protein, humanAdgrg2 protein, mouseAtaxin-7Codon, NonsenseReceptors, G-Protein-Coupled

Identifiers

PMID30389958
PMCPMC6214919
OpenAlexW2899492394

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.