Evidence map›Paper›PMID 30388838›Full record

ArticleViruses2018

Evolution of Codon Usage Bias in Henipaviruses Is Governed by Natural Selection and Is Host-Specific.

Naveen Kumar, Diwakar D Kulkarni, Benhur Lee, Rahul Kaushik, Sandeep Bhatia, Richa Sood, Atul Kumar Pateriya, Sushant Bhat, Vijendra Pal Singh

Open access · goldAbstract read
In one paragraph

Article in Viruses, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
4.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 50 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Over time analysis of the codon usage of SARS-CoV-2 and its variants.Computational and structural biotechnology journal · 2025
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Codon usage analysis of zoonotic coronaviruses reveals lower adaptation to humans by SARS-CoV-2.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2021
    Article
  13. Review
  14. Article
  15. Article
  16. Deciphering the co-adaptation of codon usage between respiratory coronaviruses and their human host uncovers candidate therapeutics for COVID-19.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2020
    Article
  17. Article
  18. Review
  19. Codon Usage in theViruses · 2019
    Article
  20. Viruses and Bats.Viruses · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 4 countries.

Naveen KumarNational Institute of High Security Animal Diseases, Bhopal 462022, India. navyog.yadav84@gmail.com.ORCID 0000-0002-3326-5465
Diwakar D KulkarniNational Institute of High Security Animal Diseases, Bhopal 462022, India. ddkulkar@gmail.com.
Benhur LeeDepartment of Microbiology, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA. benhur.lee@mssm.edu.ORCID 0000-0003-0760-1709
Rahul KaushikSupercomputing Facility for Bioinformatics & Computational Biology, Indian Institute of Technology, Delhi 110016, India. rahul.hau.bioinfo@gmail.com.
Sandeep BhatiaNational Institute of High Security Animal Diseases, Bhopal 462022, India. sbhatia1967@gmail.com.
Richa SoodNational Institute of High Security Animal Diseases, Bhopal 462022, India. richa.bhatia0609@gmail.com.
Atul Kumar PateriyaNational Institute of High Security Animal Diseases, Bhopal 462022, India. aatulpateriya@gmail.com.
Sushant BhatThe Pirbright Institute, Woking GU24 0NF, UK. sushant.shanty@gmail.com.
Vijendra Pal SinghNational Institute of High Security Animal Diseases, Bhopal 462022, India. vijendra61@gmail.com.
National Institute of High Security Animal Diseases · INIcahn School of Medicine at Mount Sinai · USRIKEN Center for Biosystems Dynamics Research · JPThe Pirbright Institute · GB

Funding

Tropism, pathogenicity, and potential for zoonotic spillover of emergent henipa- and henipa-like virusesR01AI123449 · NIAID · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI LEE, BENHUR · 2016 to 2020
$2.7M
SUMO and ubiquitin modifications in henipavirus matrix trafficking and functionR01AI125536 · NIAID · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI LEE, BENHUR · 2016 to 2020
$2.1M
NIAID NIH HHS R01 AI123449NIAID NIH HHS R01 AI125536
6 · The paper itself

Abstract

Hendra virus (HeV) and Nipah virus (NiV) are among a group of emerging

Indexed as

CodonEvolution, MolecularHost-Pathogen InteractionsHost SpecificitySelection, GeneticAdaptation, BiologicalAnimalsChiropteraGenome, ViralGenomicsHenipavirusHenipavirus InfectionsHumansPhylogenyCodoncodon usage biasevolutionHenipaviruseshost adaptationnatural selection

Identifiers

PMID30388838
PMCPMC6266499
OpenAlexW2898629212

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.