Evidence map›Paper›PMID 30388832›Full record

ArticleMolecules (Basel, Switzerland)2018

Construction of a Quantitative Acetylomic Tissue Atlas in Rice (

Zhiyong Li, Yifeng Wang, Babatunde Kazeem Bello, Abolore Adijat Ajadi, Xiaohong Tong, Yuxiao Chang, Jian Zhang

Open access · goldAbstract read
In one paragraph

Article in Molecules (Basel, Switzerland), 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.4field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Special Issue: Mass Spectrometric Proteomics.Molecules (Basel, Switzerland) · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Zhiyong LiState Key Lab of Rice Biology, China National Rice Research Institute, Hangzhou 311400, China. lzhy1418@163.com.
Yifeng WangState Key Lab of Rice Biology, China National Rice Research Institute, Hangzhou 311400, China. wangyifeng@caas.cn.
Babatunde Kazeem BelloState Key Lab of Rice Biology, China National Rice Research Institute, Hangzhou 311400, China. tunlapa2k3@yahoo.com.
Abolore Adijat AjadiState Key Lab of Rice Biology, China National Rice Research Institute, Hangzhou 311400, China. threetriplea@yahoo.com.
Xiaohong TongState Key Lab of Rice Biology, China National Rice Research Institute, Hangzhou 311400, China. tongxiaohong@caas.cn.
Yuxiao ChangAgricultural Genomes Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen 518120, China. Changyuxiao@caas.cn.ORCID 0000-0002-0703-3732
Jian ZhangState Key Lab of Rice Biology, China National Rice Research Institute, Hangzhou 311400, China. zhangjian@caas.cn.ORCID 0000-0003-2804-0162
China National Rice Research Institute · CNAgricultural Genomics Institute at Shenzhen · CN

Funding

National Natural Science Foundation of China 31401366Shenzhen science and technology research funding JSGG20160429104101251
6 · The paper itself

Abstract

PKA (protein lysine acetylation) is a key post-translational modification involved in the regulation of various biological processes in rice. So far, rice acetylome data is very limited due to the highly-dynamic pattern of protein expression and PKA modification. In this study, we performed a comprehensive quantitative acetylome profile on four typical rice tissues, i.e., the callus, root, leaf, and panicle, by using a mass spectrometry (MS)-based, label-free approach. The identification of 1536 acetylsites on 1454 acetylpeptides from 890 acetylproteins represented one of the largest acetylome datasets on rice. A total of 1445 peptides on 887 proteins were differentially acetylated, and are extensively involved in protein translation, chloroplast development, and photosynthesis, flowering and pollen fertility, and root meristem activity, indicating the important roles of PKA in rice tissue development and functions. The current study provides an overall view of the acetylation events in rice tissues, as well as clues to reveal the function of PKA proteins in physiologically-relevant tissues.

Indexed as

Protein Processing, Post-TranslationalProteomeProteomicsAcetylationAmino Acid MotifsAmino Acid SequenceComputational BiologyLysineOrgan SpecificityOryzaPlant ProteinsProtein Interaction MappingProtein Interaction MapsLysinePlant ProteinsProteomepost-translational modificationprotein lysine acetylationproteomeRice (Oryza sativa L.)tissue atlas

Identifiers

PMID30388832
PMCPMC6278296
OpenAlexW2898921320

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.