Evidence map›Paper›PMID 30388453›Full record

ArticleCell2018

US Immigration Westernizes the Human Gut Microbiome.

Pajau Vangay, Abigail J Johnson, Tonya L Ward, Gabriel A Al-Ghalith, Robin R Shields-Cutler, Benjamin M Hillmann, Sarah K Lucas, Lalit K Beura, Emily A Thompson, Lisa M Till and 14 more

Abstract read
In one paragraph

Article in Cell, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 445 papers, 5 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
445citing papers in PubMed, 5 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

445 citing papers in PubMed, 5 syntheses or guidelines pooled it.

  1. Pooled it
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  5. Obesity in Refugees post-resettlement in a high-income country: a meta-analysis.Journal of racial and ethnic health disparities · 2024
    Pooled it
  6. Trial
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  11. Article
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  17. Sex-Biased Immunity: The Hidden Variable in Immuno-oncology.Clinical cancer research : an official journal of the American Association for Cancer Research · 2026
    Review
  18. Article
  19. Article
  20. Intersections of gastrointestinal dysbiosis of the gut microbiome and aging.World journal of gastrointestinal pathophysiology · 2026
    Review

385 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

24 authors.

Pajau VangayBioinformatics and Computational Biology Program, University of Minnesota, Minneapolis, MN 55455, USA.
Abigail J JohnsonBiotechnology Institute, University of Minnesota, Minneapolis, MN 55455, USA.
Tonya L WardBiotechnology Institute, University of Minnesota, Minneapolis, MN 55455, USA.
Gabriel A Al-GhalithBioinformatics and Computational Biology Program, University of Minnesota, Minneapolis, MN 55455, USA.
Robin R Shields-CutlerBiotechnology Institute, University of Minnesota, Minneapolis, MN 55455, USA.
Benjamin M HillmannDepartment of Computer Science and Engineering, University of Minnesota, Minneapolis, MN 55455, USA.
Sarah K LucasCenter for Immunology, Department of Microbiology and Immunology, University of Minnesota, Minneapolis, MN 55455, USA.
Lalit K BeuraCenter for Immunology, Department of Microbiology and Immunology, University of Minnesota, Minneapolis, MN 55455, USA.
Emily A ThompsonCenter for Immunology, Department of Microbiology and Immunology, University of Minnesota, Minneapolis, MN 55455, USA.
Lisa M TillDivision of Gastroenterology and Hepatology, Department of Internal Medicine, Mayo Clinic, Rochester, MN 55902, USA.
Rodolfo BatresSomali, Latino, and Hmong Partnership for Health and Wellness, West Side Community Health Services, St. Paul, MN 55106, USA.
Bwei PawSomali, Latino, and Hmong Partnership for Health and Wellness, West Side Community Health Services, St. Paul, MN 55106, USA.
Shannon L PergamentSomali, Latino, and Hmong Partnership for Health and Wellness, West Side Community Health Services, St. Paul, MN 55106, USA.
Pimpanitta SaenyakulSomali, Latino, and Hmong Partnership for Health and Wellness, West Side Community Health Services, St. Paul, MN 55106, USA.
Mary XiongSomali, Latino, and Hmong Partnership for Health and Wellness, West Side Community Health Services, St. Paul, MN 55106, USA.
Austin D KimDepartment of Mathematics, Statistics, and Computer Science, Macalester College, St. Paul, MN 55105, USA.
Grant KimCollege of Biological Sciences, University of Minnesota, Minneapolis, MN 55455, USA.
David MasopustCenter for Immunology, Department of Microbiology and Immunology, University of Minnesota, Minneapolis, MN 55455, USA.
Eric C MartensDepartment of Microbiology & Immunology, University of Michigan, Ann Arbor, MI 48109, USA.
Chaisiri AngkurawaranonDepartment of Family Medicine, Faculty of Medicine, Chiang Mai University, Chiang Mai 50200, Thailand.
Rose McGreadyShoklo Malaria Research Unit, Mahidol-Oxford Tropical Medicine Research Unit, Faculty of Tropical Medicine, Mahidol University, Mae Sot 63110, Thailand; Centre for Tropical Medicine and Global Health, Nuffield Department of Medicine, University of Oxford, Old Road Campus, Oxford OX3 7BN, UK.
Purna C KashyapDivision of Gastroenterology and Hepatology, Department of Internal Medicine, Mayo Clinic, Rochester, MN 55902, USA.
Kathleen A Culhane-PeraSomali, Latino, and Hmong Partnership for Health and Wellness, West Side Community Health Services, St. Paul, MN 55106, USA.
Dan KnightsBioinformatics and Computational Biology Program, University of Minnesota, Minneapolis, MN 55455, USA; Biotechnology Institute, University of Minnesota, Minneapolis, MN 55455, USA; Department of Computer Science and Engineering, University of Minnesota, Minneapolis, MN 55455, USA. Electronic address: dknights@umn.edu.

Funding

University of Minnesota Clinical and Translational Science Institute (UMN CTSI)UL1TR002494 · NCATS · UNIVERSITY OF MINNESOTA · PI BLAZAR, BRUCE R, WEISDORF, DANIEL J · 2018 to 2022
$34.9M
Mechanisms of alteration of GI physiology by gut microbesR01DK114007 · NIDDK · MAYO CLINIC ROCHESTER · PI Purna C Kashyap · 2017 to 2026
$4.7M
NCATS NIH HHS UL1 TR002494
6 · The paper itself

Abstract

Many US immigrant populations develop metabolic diseases post immigration, but the causes are not well understood. Although the microbiome plays a role in metabolic disease, there have been no studies measuring the effects of US immigration on the gut microbiome. We collected stool, dietary recalls, and anthropometrics from 514 Hmong and Karen individuals living in Thailand and the United States, including first- and second-generation immigrants and 19 Karen individuals sampled before and after immigration, as well as from 36 US-born European American individuals. Using 16S and deep shotgun metagenomic DNA sequencing, we found that migration from a non-Western country to the United States is associated with immediate loss of gut microbiome diversity and function in which US-associated strains and functions displace native strains and functions. These effects increase with duration of US residence and are compounded by obesity and across generations.

Indexed as

Asian PeopleEmigration and ImmigrationGastrointestinal MicrobiomeAdultBacteroidesDietary FiberEmigrants and ImmigrantsHumansMetagenomeObesityPrevotellaUnited StatesDietary FiberBacteriodesimmigrant healthimmigrationmetagenomicsmicrobiomemicrobiotaobesityPrevotellarefugee health

Identifiers

PMID30388453
PMCPMC6498444

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.