Evidence map›Paper›PMID 30388413›Full record

ArticleMolecular cell2018

Ligand Modulates Cross-Coupling between Riboswitch Folding and Transcriptional Pausing.

Julia R Widom, Yuri A Nedialkov, Victoria Rai, Ryan L Hayes, Charles L Brooks, Irina Artsimovitch, Nils G Walter

Open access · bronzeAbstract read
In one paragraph

Article in Molecular cell, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
2.2field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 84 citations in OpenAlex.

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  19. RNA folding kinetics control riboswitch sensitivity in vivo.bioRxiv : the preprint server for biology · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Julia R WidomSingle Molecule Analysis Group, Department of Chemistry, University of Michigan, Ann Arbor, MI 48109, USA; Center for RNA Biomedicine, University of Michigan, Ann Arbor, MI 48109, USA.
Yuri A NedialkovDepartment of Microbiology, The Ohio State University, Columbus, OH 43210, USA; Center for RNA Biology, The Ohio State University, Columbus, OH 43210, USA.
Victoria RaiSingle Molecule Analysis Group, Department of Chemistry, University of Michigan, Ann Arbor, MI 48109, USA; Center for RNA Biomedicine, University of Michigan, Ann Arbor, MI 48109, USA; Biophysics Program and Department of Chemistry, University of Michigan, Ann Arbor, MI 48109, USA.
Ryan L HayesBiophysics Program and Department of Chemistry, University of Michigan, Ann Arbor, MI 48109, USA.
Charles L BrooksBiophysics Program and Department of Chemistry, University of Michigan, Ann Arbor, MI 48109, USA.
Irina ArtsimovitchDepartment of Microbiology, The Ohio State University, Columbus, OH 43210, USA; Center for RNA Biology, The Ohio State University, Columbus, OH 43210, USA.
Nils G WalterSingle Molecule Analysis Group, Department of Chemistry, University of Michigan, Ann Arbor, MI 48109, USA; Center for RNA Biomedicine, University of Michigan, Ann Arbor, MI 48109, USA. Electronic address: nwalter@umich.edu.
University of Michigan–Ann Arbor · USThe Ohio State University · US

Funding

Mechnanism of transcript elongation control by RfaHR01GM067153 · NIGMS · OHIO STATE UNIVERSITY · PI IRINA ARTSIMOVITCH · 2003 to 2026
$8.0M
The RNA nanomachines of the gene expression machinery dissected at the single molecule levelR35GM131922 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI NILS G WALTER · 2019 to 2026
$6.9M
U-turn of the Hepatitis Delta Virus RibozymeR01GM062357 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI WALTER, NILS G · 2001 to 2019
$5.8M
Theoretical Studies of Receptor-Ligand InteractionsR01GM037554 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI BROOKS, CHARLES L · 1987 to 2018
$3.8M
Cotranscriptional folding of single riboswitchesR01GM118524 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI WALTER, NILS G · 2016 to 2018
$911k
Novel Tools to Investigate Local and Global RNA Conformations in the SpliceosomeR00GM120457 · NIGMS · UNIVERSITY OF OREGON · PI WIDOM, JULIA REED · 2019 to 2021
$747k
Novel tools to investigate local and global RNA conformations in the spliceosomeK99GM120457 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI WIDOM, JULIA REED · 2016 to 2017
$180k
Dissecting the Functions of RNA Helicases in Single SpliceosomesF32GM113297 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI WIDOM, JULIA REED · 2015 to 2016
$91k
NIGMS NIH HHS F32 GM113297NIGMS NIH HHS K99 GM120457NIGMS NIH HHS R00 GM120457NIGMS NIH HHS R01 GM037554NIGMS NIH HHS R01 GM062357NIGMS NIH HHS R01 GM067153NIGMS NIH HHS R01 GM118524NIGMS NIH HHS R35 GM131922
6 · The paper itself

Abstract

Numerous classes of riboswitches have been found to regulate bacterial gene expression in response to physiological cues, offering new paths to antibacterial drugs. As common studies of isolated riboswitches lack the functional context of the transcription machinery, we here combine single-molecule, biochemical, and simulation approaches to investigate the coupling between co-transcriptional folding of the pseudoknot-structured preQ

Indexed as

Aptamers, NucleotideDNA-Directed RNA PolymerasesEscherichia coliEscherichia coli ProteinsFluorescence Resonance Energy TransferGene Expression Regulation, BacterialLigandsNucleic Acid ConformationNucleoside QProtein FoldingRiboswitchRNA, BacterialRNA FoldingSingle Molecule ImagingTranscription, GeneticAptamers, NucleotideDNA-Directed RNA PolymerasesEscherichia coli ProteinsLigandsNucleoside QRiboswitchRNA, Bacterialco-transcriptional foldingpausingriboswitchRNA polymerasesingle-molecule FRET

Identifiers

PMID30388413
PMCPMC6565381
OpenAlexW2953101164

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.