Evidence map›Paper›PMID 30388143›Full record

ArticlePloS one2018

HAVCR1 expression might be a novel prognostic factor for gastric cancer.

Lingling Liu, Zhaoquan Song, Yingchun Zhao, Chao Li, Hua Wei, Ji Ma, Yaowu Du

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
0.7field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 21 citations in OpenAlex.

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  9. Role of TIM-1 in the development and treatment of tumours.Frontiers in cell and developmental biology · 2024
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 6 institutions in 1 country.

Lingling LiuDepartment of Clinical Laboratory, Shandong Provincial Hospital Affiliated to Shandong University, Jinan, Shandong, China.
Zhaoquan SongClinical Laboratory, Linyi Luozhuang Central Hospital, Linyi, Shandong, China.
Yingchun ZhaoThe 1st Ward of the Department of Paediatrics, Zhangqiu People's Hospital, Jinan, Shandong, China.
Chao LiDepartment of NMR, Heilongjiang Provincial Hospital, Harbin, Heilongjiang, China.
Hua WeiDepartment of Endoscopy, Huaihe Hospital, Henan University, Kaifeng, China.
Ji MaDepartment of Endoscopy, Huaihe Hospital, Henan University, Kaifeng, China.
Yaowu DuLaboratory for Nanomedicine, School of Basic Medical Science, Henan University, Kaifeng, China.ORCID 0000-0002-7957-0035
Henan University Huaihe Hospital and Huaihe Clinical Institute · CNHeilongjiang Provincial Hospital · CNHenan University · CNLinyi People's Hospital · CNShandong University · CNZhangqiu City People's Hospital · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Hepatitis A virus cellular receptor 1 (HAVCR1), which is also known as T-cell immunoglobulin and mucin domain 1 (TIM-1) is a TIM gene family member. In this study, we aimed to characterize the expression profile of HAVCR1 in GC, its prognostic value and the potential epigenetic mechanism leading to its dysregulation. Bioinformatic analysis was performed by using genomic, clinicopathological and survival data in the human protein atlas (HPA) and the Cancer Genome Atlas (TCGA). Results showed that HAVCR1 was significantly upregulated at the mRNA and protein level in GC tissues compared to the adjacent normal tissues. In addition, HAVCR1 upregulation was an independent indicator of shorter OS (HR: 1.698, 95%CI: 1.221-2.361, p = 0.002), after adjustment of older age, differentiation status, pathological stages and the presence of residual tumor and was also an independent indicator of shorter RFS (HR: 2.577, 95%CI: 1.583-4.197, p<0.001), after adjustment of gender and histological grade. The methylation level of two CpG sites (cg11188031 and cg07320595) was negatively correlated with HAVCR1 expression. However, only high methylation level of cg07320595 was associated with significantly longer OS (p = 0.018) and RFS (p = 0.021). Based on these findings, we infer that HAVCR1 upregulation might serve as a valuable prognostic marker in terms of OS and RFS in GC patients. Cg07320595 might be a critical CpG site influencing HAVCR1 expression.

Indexed as

Gene Expression Regulation, NeoplasticAgedComputational BiologyFemaleHepatitis A Virus Cellular Receptor 1HumansMaleMiddle AgedPrognosisRNA, MessengerStomach NeoplasmsSurvival AnalysisTreatment OutcomeHAVCR1 protein, humanHepatitis A Virus Cellular Receptor 1RNA, Messenger

Identifiers

PMID30388143
PMCPMC6214515
OpenAlexW2898718253

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.