Evidence map›Paper›PMID 30387229›Full record

ArticleCancer science2019

NOTCH1 pathway activating mutations and clonal evolution in pediatric T-cell acute lymphoblastic leukemia.

Shunsuke Kimura, Masafumi Seki, Kenichi Yoshida, Yuichi Shiraishi, Masaharu Akiyama, Katsuyoshi Koh, Toshihiko Imamura, Atsushi Manabe, Yasuhide Hayashi, Masao Kobayashi and 4 more

Open access · goldAbstract read
In one paragraph

Article in Cancer science, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed, 1 pooled it
4.4field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 1 synthesis or guideline pooled it, 30 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. [The role and research progress of NOTCH1 in T-cell acute lymphoblastic leukemia].Zhonghua xue ye xue za zhi = Zhonghua xueyexue zazhi · 2021
    Article
  11. Review
  12. Article
  13. Mutations inFrontiers in oncology · 2021
    Article
  14. Review
  15. Review
  16. Molecular markers in ALL: Clinical implications.Best practice & research. Clinical haematology · 2020
    Review
  17. Article
  18. Next-Generation Sequencing in Acute Lymphoblastic Leukemia.International journal of molecular sciences · 2019
    Review
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 9 institutions in 1 country.

Shunsuke KimuraDepartment of Pediatrics, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan.ORCID http://orcid.org/0000-0002-2158-467X
Masafumi SekiDepartment of Pediatrics, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan.
Kenichi YoshidaDepartment of Pathology and Tumor Biology, Graduate School of Medicine, Kyoto University, Kyoto, Japan.
Yuichi ShiraishiLaboratory of DNA Information Analysis, Human Genome Center, Institute of Medical Science, The University of Tokyo, Tokyo, Japan.
Masaharu AkiyamaDepartment of Pediatrics, The Jikei University School of Medicine, Tokyo, Japan.
Katsuyoshi KohDepartment of Hematology/Oncology, Saitama Children's Medical Center, Saitama, Japan.
Toshihiko ImamuraDepartment of Pediatrics, Kyoto Prefectural University of Medicine, Graduate School of Medical Science, Kyoto, Japan.
Atsushi ManabeDepartment of Pediatrics, St. Luke's International Hospital, Tokyo, Japan.
Yasuhide HayashiGunma Children's Medical Center, Shibukawa, Japan.
Masao KobayashiDepartment of Pediatrics, Hiroshima University, Hiroshima, Japan.
Akira OkaDepartment of Pediatrics, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan.
Satoru MiyanoLaboratory of DNA Information Analysis, Human Genome Center, Institute of Medical Science, The University of Tokyo, Tokyo, Japan.
Seishi OgawaDepartment of Pathology and Tumor Biology, Graduate School of Medicine, Kyoto University, Kyoto, Japan.
Junko TakitaDepartment of Pediatrics, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan.
Kyoto University · JPHiroshima University · JPThe University of Tokyo · JPTokyo Medical University · JPGunma Children's Medical Center · JPJikei University School of Medicine · JPKyoto Prefectural University of Medicine · JPSaitama Children's Medical Center · JPSt. Luke's International Hospital · JP

Funding

Children's Cancer Association of JapanJapan Agency for Medical Research and Development (AMED) Practical Research for Innovative Cancer Control and Project for Cancer Research and Therapeutic Evolution (P-CREATE) 16cm0106509h001KAKENHI 15H05909KAKENHI 17H04224the Friends of Leukemia Research Fund
6 · The paper itself

Abstract

Molecular mechanisms involved in the relapse of T-cell acute lymphoblastic leukemia (T-ALL) are not fully understood, although activating NOTCH1 signaling due to NOTCH1/FBXW7 alterations is a major oncogenic driver. To unravel the relevance of NOTCH1/FBXW7 mutations associated with relapse, we performed whole-exome sequencing in 30 pediatric T-ALL cases, among which 11 diagnosis-relapse paired cases were further investigated to track the clonal evolution of relapse using amplicon-based deep sequencing. NOTCH1/FBXW7 alterations were detected in 73.3% (diagnosis) and 72.7% (relapse) of cases. Single nucleotide variations in the heterodimerization domain were the most frequent (40.0%) at diagnosis, whereas proline, glutamic acid, serine, threonine-rich (PEST) domain alterations were the most frequent at relapse (54.5%). Comparison between non-relapsed and relapsed cases at diagnosis showed a predominance of PEST alterations in relapsed cases (P = .045), although we failed to validate this in the TARGET cohort. Based on the clonal analysis of diagnosis-relapse samples, we identified NOTCH1 "switching" characterized by different NOTCH1 mutations in a major clone between diagnosis and relapse samples in 2 out of 11 diagnosis-relapse paired cases analyzed. We found another NOTCH1 "switching" case in a previously reported Berlin-Frankfurt-Münster cohort (n = 13), indicating NOTCH1 importance in both the development and progression of T-ALL. Despite the limitations of having a small sample size and a non-minimal residual disease-based protocol, our results suggest that the presence of NOTCH1 mutations might contribute to the disease relapse of T-ALL.

Indexed as

AdolescentChildChild, PreschoolClonal EvolutionF-Box-WD Repeat-Containing Protein 7FemaleGenotypeHigh-Throughput Nucleotide SequencingHumansMaleMutationPolymorphism, Single NucleotidePrecursor T-Cell Lymphoblastic Leukemia-LymphomaReceptor, Notch1RecurrenceSignal TransductionF-Box-WD Repeat-Containing Protein 7FBXW7 protein, humanNOTCH1 protein, humanReceptor, Notch1NOTCH1pediatric leukemiarelapseT-cell acute lymphoblastic leukemiawhole-exome sequencing

Identifiers

PMID30387229
PMCPMC6361559
OpenAlexW2899404307

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.