ArticleMolecular biology reports2018
RNA-Seq-based transcriptome analysis of reproduction- and growth-related genes in Lateolabrax japonicus ovaries at four different ages.
Article in Molecular biology reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.
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4 citing papers in PubMed, 9 citations in OpenAlex.
- Article
- Transcriptomic profiling to unravel the underlying causes of early gonadal development of hilsa (Tenualosa ilisha) in Bangladesh.Scientific reports · 2025Article
- Comparison of differential expression genes in ovaries and testes of Pearlscale angelfish Centropyge vrolikii based on RNA-Seq analysis.Fish physiology and biochemistry · 2021Article
- De novo transcriptome assembly from the gonads of a scleractinian coral, Euphyllia ancora: molecular mechanisms underlying scleractinian gametogenesis.BMC genomics · 2020Article
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Authors and funding
3 authors at 2 institutions in 2 countries.
Funding
Abstract
Lateolabrax japonicus is an abundant marine aquatic fish species that is commonly cultured in East Asia due to its high commercial value. In this study, RNA-Seq analysis of L. japonicus was carried out to identify reproduction- and growth-related genes expressed in L. japonicus ovaries at different ages using Illumina sequencing technology. In total, 334,388,688 high-quality reads were obtained in four libraries, i.e., 4-year-old ovaries (4th_Ovary), 3-year-old ovaries (3rd_Ovary), 2-year-old ovaries (2nd_Ovary), and 1-year-old ovaries (1st_Ovary). The reads were then de novo assembled into 101,860 unigenes with an average unigene length of 879 bp. In total, 30,142 unigenes (29.59%) were annotated in public databases, including Nr database (Nr), Swiss-Prot, Kyoto Encyclopedia of Genes and Genomes (KEGG), and Cluster of Orthologous Groups of proteins (COG), based on sequence similarity. Comparative analysis revealed that there were 35,749, 43,657, and 36,819 differentially expressed genes (DEGs) in three comparisons (4th_Ovary versus 3rd_Ovary, 4th_Ovary versus 2rd_Ovary, and 4th_Ovary versus 1st_Ovary, respectively). In total, 24,295 DEGs were different expressed in 4th_Ovary. Enrichment and pathway analyses of the DEGs were also carried out to excavate the candidate genes related to reproduction and growth, and 402 genes that potential involved in the regulation of reproduction and growth were identified, e.g., GnRHR (GnRH receptor), GHR 2 (growth hormone receptor 2), I_LGF1R (insulin-like growth factor 1 receptor), etc. Our findings expanded the genomic resources of L. japonicus and provided fundamental information for further studies.
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