Evidence map›Paper›PMID 30385749›Full record

ArticleNature communications2018

Structural insights into the π-π-π stacking mechanism and DNA-binding activity of the YEATS domain.

Brianna J Klein, Kendra R Vann, Forest H Andrews, Wesley W Wang, Jibo Zhang, Yi Zhang, Anastasia A Beloglazkina, Wenyi Mi, Yuanyuan Li, Haitao Li and 5 more

Open access · greenAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 34 citations in OpenAlex.

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  20. Engaging with benzoyllysine through a π-π-π mechanism.Current opinion in chemical biology · 2023
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 6 institutions in 2 countries.

Brianna J KleinDepartment of Pharmacology, University of Colorado School of Medicine, Aurora, CO, 80045, USA.
Kendra R VannDepartment of Pharmacology, University of Colorado School of Medicine, Aurora, CO, 80045, USA.
Forest H AndrewsDepartment of Pharmacology, University of Colorado School of Medicine, Aurora, CO, 80045, USA.
Wesley W WangDepartment of Chemistry, Texas A&M University, College Station, TX, 77843, USA.
Jibo ZhangDepartment of Biochemistry & Biophysics, The University of North Carolina School of Medicine, Chapel Hill, NC, 27599, USA.
Yi ZhangDepartment of Pharmacology, University of Colorado School of Medicine, Aurora, CO, 80045, USA.ORCID http://orcid.org/0000-0001-8170-9983
Anastasia A BeloglazkinaDepartment of Chemistry and Biochemistry, University of Denver, Denver, CO, 80210, USA.
Wenyi MiCenter for Epigenetics, Van Andel Research Institute, Grand Rapids, MI, 49503, USA.ORCID http://orcid.org/0000-0002-7453-051X
Yuanyuan LiDepartment of Basic Medical Sciences, School of Medicine, Tsinghua University, 100084, Beijing, P.R. China.
Haitao LiDepartment of Basic Medical Sciences, School of Medicine, Tsinghua University, 100084, Beijing, P.R. China.ORCID http://orcid.org/0000-0001-6741-293X
Xiaobing ShiCenter for Epigenetics, Van Andel Research Institute, Grand Rapids, MI, 49503, USA.ORCID http://orcid.org/0000-0001-5242-8189
Andrei G KutateladzeDepartment of Chemistry and Biochemistry, University of Denver, Denver, CO, 80210, USA.
Brian D StrahlDepartment of Biochemistry & Biophysics, The University of North Carolina School of Medicine, Chapel Hill, NC, 27599, USA.ORCID http://orcid.org/0000-0002-4947-6259
Wenshe R LiuDepartment of Chemistry, Texas A&M University, College Station, TX, 77843, USA.ORCID http://orcid.org/0000-0002-7078-6534
Tatiana G KutateladzeDepartment of Pharmacology, University of Colorado School of Medicine, Aurora, CO, 80045, USA. tatiana.kutateladze@ucdenver.edu.ORCID http://orcid.org/0000-0001-7375-6990
University of Colorado Denver · USTexas A&M University · USTsinghua University · CNUniversity of Denver · USUniversity of North Carolina at Chapel Hill · USVan Andel Institute · US

Funding

Mechanisms of chromatin and transcriptional regulationR35GM126900 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Brian D Strahl · 2018 to 2026
$5.5M
Role of GAS41 in Human CancerR01CA204020 · NCI · VAN ANDEL RESEARCH INSTITUTE · PI SHI, XIAOBING · 2016 to 2020
$2.0M
Epigenetic regulation by PHF1R01GM106416 · NIGMS · UNIVERSITY OF COLORADO DENVER · PI KUTATELADZE, TATIANA G · 2015 to 2018
$1.5M
Molecular mechanism of chromatin targeting by BRPF1R01GM100907 · NIGMS · UNIVERSITY OF COLORADO DENVER · PI KUTATELADZE, TATIANA G · 2015 to 2018
$1.4M
Interdomain crosstalk in MORC3R01GM125195 · NIGMS · UNIVERSITY OF COLORADO DENVER · PI KUTATELADZE, TATIANA G · 2017 to 2021
$1.3M
Studying Reversible Histone Acylations in Nucleosome ContextsR01GM121584 · NIGMS · TEXAS A&M UNIVERSITY · PI LIU, WENSHE RAY · 2017 to 2020
$1.3M
NCI NIH HHS R01 CA204020NIGMS NIH HHS R01 GM100907NIGMS NIH HHS R01 GM106416NIGMS NIH HHS R01 GM121584NIGMS NIH HHS R01 GM125195NIGMS NIH HHS R35 GM126900
6 · The paper itself

Abstract

The YEATS domain has been identified as a reader of histone acylation and more recently emerged as a promising anti-cancer therapeutic target. Here, we detail the structural mechanisms for π-π-π stacking involving the YEATS domains of yeast Taf14 and human AF9 and acylated histone H3 peptides and explore DNA-binding activities of these domains. Taf14-YEATS selects for crotonyllysine, forming π stacking with both the crotonyl amide and the alkene moiety, whereas AF9-YEATS exhibits comparable affinities to saturated and unsaturated acyllysines, engaging them through π stacking with the acyl amide. Importantly, AF9-YEATS is capable of binding to DNA, whereas Taf14-YEATS is not. Using a structure-guided approach, we engineered a mutant of Taf14-YEATS that engages crotonyllysine through the aromatic-aliphatic-aromatic π stacking and shows high selectivity for the crotonyl H3K9 modification. Our findings shed light on the molecular principles underlying recognition of acyllysine marks and reveal a previously unidentified DNA-binding activity of AF9-YEATS.

Indexed as

Histone CodeProtein DomainsAcetylationAcylationCrystallography, X-RayDNAHumansLysineMutationNuclear ProteinsProtein BindingSaccharomyces cerevisiae ProteinsTranscription Factor TFIIDDNALysineMLLT3 protein, humanNuclear ProteinsSaccharomyces cerevisiae ProteinsTAF14 protein, S cerevisiaeTranscription Factor TFIID

Identifiers

PMID30385749
PMCPMC6212594
OpenAlexW2898098773

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.