Evidence map›Paper›PMID 30385480›Full record

ArticleMolecular & cellular proteomics : MCP2018

Online Parallel Accumulation-Serial Fragmentation (PASEF) with a Novel Trapped Ion Mobility Mass Spectrometer.

Florian Meier, Andreas-David Brunner, Scarlet Koch, Heiner Koch, Markus Lubeck, Michael Krause, Niels Goedecke, Jens Decker, Thomas Kosinski, Melvin A Park and 5 more

Open access · hybridAbstract read
In one paragraph

Article in Molecular & cellular proteomics : MCP, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 502 papers.

0numbers the graph read from it
0cells of the map it votes in
502citing papers in PubMed
41.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

502 citing papers in PubMed, 1,004 citations in OpenAlex.

  1. Preprocessing Large-Scale Proteomics Data.Methods in molecular biology (Clifton, N.J.) · 2027
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  8. Priming of CD8Nature neuroscience · 2026
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  10. mNature metabolism · 2026
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  15. β-lactamase genes in clinical isolates of Capnocytophaga canimorsus and description of a novel class D β-lactamase, OXA-1422.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2026
    Article
  16. Article
  17. Review
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  19. Article
  20. Article

442 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 3 countries.

Florian MeierProteomics and Signal Transduction, Max Planck Institute of Biochemistry, Am Klopferspitz 18, 82152 Martinsried, Germany.
Andreas-David BrunnerProteomics and Signal Transduction, Max Planck Institute of Biochemistry, Am Klopferspitz 18, 82152 Martinsried, Germany.
Scarlet KochBruker Daltonik GmbH, Fahrenheitstr. 4, 28359 Bremen, Germany.
Heiner KochBruker Daltonik GmbH, Fahrenheitstr. 4, 28359 Bremen, Germany.
Markus LubeckBruker Daltonik GmbH, Fahrenheitstr. 4, 28359 Bremen, Germany.
Michael KrauseBruker Daltonik GmbH, Fahrenheitstr. 4, 28359 Bremen, Germany.
Niels GoedeckeBruker Daltonik GmbH, Fahrenheitstr. 4, 28359 Bremen, Germany.
Jens DeckerBruker Daltonik GmbH, Fahrenheitstr. 4, 28359 Bremen, Germany.
Thomas KosinskiBruker Daltonik GmbH, Fahrenheitstr. 4, 28359 Bremen, Germany.
Melvin A ParkBruker Daltonics Inc., Manning Road, Billerica, Massachusetts 01821.
Nicolai BacheEvosep Biosystems, Thriges Pl. 6, 5000 Odense, Denmark.
Ole HoerningEvosep Biosystems, Thriges Pl. 6, 5000 Odense, Denmark.
Jürgen CoxComputational Systems Biochemistry, Max Planck Institute of Biochemistry, Am Klopferspitz 18, 82152 Martinsried, Germany.
Oliver RätherBruker Daltonik GmbH, Fahrenheitstr. 4, 28359 Bremen, Germany.
Matthias MannProteomics and Signal Transduction, Max Planck Institute of Biochemistry, Am Klopferspitz 18, 82152 Martinsried, Germany; NNF Center for Protein Research, Faculty of Health Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark. Electronic address: mmann@biochem.mpg.de.
Fahrenheit (Germany) · DEMax Planck Institute of Biochemistry · DEBruker (United States) · USUniversity of Copenhagen · DK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In bottom-up proteomics, peptides are separated by liquid chromatography with elution peak widths in the range of seconds, whereas mass spectra are acquired in about 100 microseconds with time-of-flight (TOF) instruments. This allows adding ion mobility as a third dimension of separation. Among several formats, trapped ion mobility spectrometry (TIMS) is attractive because of its small size, low voltage requirements and high efficiency of ion utilization. We have recently demonstrated a scan mode termed parallel accumulation - serial fragmentation (PASEF), which multiplies the sequencing speed without any loss in sensitivity (Meier

Indexed as

AlgorithmsChromatography, LiquidData AccuracyEscherichia coliEscherichia coli ProteinsHeLa CellsHumansIon Mobility SpectrometryIonsPeptidesProteomeProteomicsReproducibility of ResultsTandem Mass SpectrometryEscherichia coli ProteinsIonsPeptidesProteomeCollisional Cross SectionHPLCion mobilityLabel-free quantificationMass SpectrometryPASEFProtein IdentificationQuantificationSequencing MSTandem Mass SpectrometryTIMS

Identifiers

PMID30385480
PMCPMC6283298
OpenAlexW2952907530

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.