Evidence map›Paper›PMID 30382337›Full record

ReviewCurrent genetics2019

Mating-type switching by homology-directed recombinational repair: a matter of choice.

Geneviève Thon, Takahisa Maki, James E Haber, Hiroshi Iwasaki

Abstract readReview
In one paragraph

Review in Current genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. The Fission Yeast Mating-Type Switching Motto: "One-for-Two" and "Two-for-One".Microbiology and molecular biology reviews : MMBR · 2023
    Review
  9. Article
  10. Review
  11. Article
  12. Establishment of heterochromatin in domain-size-dependent bursts.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  13. Article
  14. Article
  15. Integrity of a heterochromatic domain ensured by its boundary elements.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  16. Article
  17. Genes · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Geneviève ThonDepartment of Biology, BioCenter, University of Copenhagen, Copenhagen, Denmark. gen@bio.ku.dk.ORCID http://orcid.org/0000-0001-8550-5945
Takahisa MakiInstitute of Innovative Research, Tokyo Institute of Technology, Tokyo, Japan.ORCID http://orcid.org/0000-0001-5989-0317
James E HaberDepartment of Biology and Rosenstiel Basic Medical Sciences Research Center, Brandeis University, Waltham, MA, 02453, USA.ORCID http://orcid.org/0000-0002-1878-0610
Hiroshi IwasakiInstitute of Innovative Research, Tokyo Institute of Technology, Tokyo, Japan.ORCID http://orcid.org/0000-0002-0153-6873

Funding

Recombination Mechanisms in Yeast Cell DifferentiationR37GM020056 · NIGMS · BRANDEIS UNIVERSITY · PI HABER, JAMES E · 2007 to 2016
$5.5M
Carlsbergfondet 2012_01_0598Carlsbergfondet CF15-0853Japan Society for the Promotion of Science 15H05974Japan Society for the Promotion of Science 18H03985Lundbeckfonden R9-2007-867NIGMS NIH HHS R37 GM020056NIH HHS R35 127029
6 · The paper itself

Abstract

In eukaryotes, all DNA transactions happen in the context of chromatin that often takes part in regulatory mechanisms. In particular, chromatin structure can regulate exchanges of DNA occurring through homologous recombination. Few systems have provided as detailed a view on this phenomenon as mating-type switching in yeast. Mating-type switching entails the choice of a template for the gene conversions of the expressed mating-type locus. In the fission yeast Schizosaccharomyces pombe, correct template choice requires two competing small recombination enhancers, SRE2 and SRE3, that function in the context of heterochromatin. These two enhancers act with the Swi2/Swi5 recombination accessory complex to initiate strand exchange in a cell-type-specific manner, from SRE2 in M cells and SRE3 in P cells. New research indicates that the Set1C complex, responsible for H3K4 methylation, and the Brl2 ubiquitin ligase, that catalyzes H2BK119 ubiquitylation, participate in the cell-type-specific selection of SRE2 or SRE3. Here, we review these findings, compare donor preference in S. pombe to the distantly related budding yeast Saccharomyces cerevisiae, and contrast the positive effects of heterochromatin on the donor selection process with other situations, where heterochromatin represses recombination.

Indexed as

Genes, Mating Type, FungalHomologous RecombinationRecombinational DNA RepairBasic Helix-Loop-Helix Leucine Zipper Transcription FactorsChromatinGene ConversionHeterochromatinHistonesMutationSaccharomyces cerevisiaeSchizosaccharomycesYeastsBasic Helix-Loop-Helix Leucine Zipper Transcription FactorsChromatinHeterochromatinHistonesChromatin structureGene conversionHistone modificationsHomology-directed repairMating-type switchingRecombination

Identifiers

PMID30382337
PMCPMC6420890

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.