Evidence map›Paper›PMID 30381482›Full record

ArticleJournal of virology2019

Determining the Mutation Bias of Favipiravir in Influenza Virus Using Next-Generation Sequencing.

Daniel H Goldhill, Pinky Langat, Hongyao Xie, Monica Galiano, Shahjahan Miah, Paul Kellam, Maria Zambon, Angie Lackenby, Wendy S Barclay

Open access · hybridAbstract read
In one paragraph

Article in Journal of virology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
6.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 55 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Small Molecule Drugs Targeting Viral Polymerases.Pharmaceuticals (Basel, Switzerland) · 2024
    Review
  5. Review
  6. Article
  7. Mutation bias and adaptation in bacteria.Microbiology (Reading, England) · 2023
    Review
  8. Antiviral Approaches against Influenza Virus.Clinical microbiology reviews · 2023
    Review
  9. Review
  10. Review
  11. Article
  12. Article
  13. Favipiravir Inhibits Hepatitis A Virus Infection in Human Hepatocytes.International journal of molecular sciences · 2022
    Article
  14. A case of avian influenza A(H5N1) in England, January 2022.Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin · 2022
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Influenza Polymerase Inhibitors: Mechanisms of Action and Resistance.Cold Spring Harbor perspectives in medicine · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Daniel H GoldhillPublic Health England, London, United Kingdom.ORCID 0000-0003-4597-5963
Pinky LangatDepartment of Virology, Faculty of Medicine, Imperial College, London, United Kingdom.
Hongyao XieDepartment of Virology, Faculty of Medicine, Imperial College, London, United Kingdom.
Monica GalianoPublic Health England, London, United Kingdom.
Shahjahan MiahPublic Health England, London, United Kingdom.
Paul KellamDepartment of Virology, Faculty of Medicine, Imperial College, London, United Kingdom.
Maria ZambonPublic Health England, London, United Kingdom.
Angie LackenbyPublic Health England, London, United Kingdom.
Wendy S BarclayDepartment of Virology, Faculty of Medicine, Imperial College, London, United Kingdom w.barclay@imperial.ac.uk.
Public Health England · GBImperial College London · GB

Funding

Wellcome TrustWellcome Trust 200187/Z/15/Z
6 · The paper itself

Abstract

Favipiravir is a broad-spectrum antiviral drug that may be used to treat influenza. Previous research has identified that favipiravir likely acts as a mutagen, but the precise mutation bias that favipiravir induces in influenza virus RNAs has not been described. Here, we use next-generation sequencing (NGS) with barcoding of individual RNA molecules to accurately and quantitatively detect favipiravir-induced mutations and to sample orders of magnitude more mutations than would be possible through Sanger sequencing. We demonstrate that favipiravir causes mutations and show that favipiravir primarily acts as a guanine analogue and secondarily as an adenine analogue resulting in the accumulation of transition mutations. We also use a standard NGS pipeline to show that the mutagenic effect of favipiravir can be measured by whole-genome sequencing of virus.

Indexed as

MutationAmidesAnimalsBiasDNA PrimersDogsHEK293 CellsHigh-Throughput Nucleotide SequencingHumansInfluenza A virusMadin Darby Canine Kidney CellsPyrazinesSequence Analysis, RNAWhole Genome SequencingAmidesDNA PrimersfavipiravirPyrazinesfavipiravirinfluenzamutation biasnext-generation sequencingPrimer ID

Identifiers

PMID30381482
PMCPMC6321902
OpenAlexW2952745536

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.