Evidence map›Paper›PMID 30381455›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2018

Silencing of retrotransposon-derived imprinted gene RTL1 is the main cause for postimplantational failures in mammalian cloning.

Dawei Yu, Jing Wang, Huiying Zou, Tao Feng, Lei Chen, Jia Li, Xiaolan Qi, Zhifang Li, Xiaoyue Duan, Chunlong Xu and 17 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 38 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Roles of retrovirus-derivedFrontiers in cell and developmental biology · 2023
    Review
  10. Article
  11. Super-enhancers conserved within placental mammals maintain stem cell pluripotency.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  12. Strategies to Improve the Efficiency of Somatic Cell Nuclear Transfer.International journal of molecular sciences · 2022
    Review
  13. Identification of the porcine IG-DMR and abnormal imprinting ofFrontiers in cell and developmental biology · 2022
    Article
  14. Article
  15. Manipulating the Epigenome in Nuclear Transfer Cloning: Where, When and How.International journal of molecular sciences · 2020
    Review
  16. Review
  17. Article
  18. Article
  19. Various nuclear reprogramming systems using egg and oocyte materials.The Journal of reproduction and development · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

27 authors at 9 institutions in 2 countries.

Dawei YuState Key Laboratory of Agrobiotechnology, College of Biological Sciences, China Agricultural University, 100193 Beijing, China.
Jing WangState Key Laboratory of Agrobiotechnology, College of Biological Sciences, China Agricultural University, 100193 Beijing, China.
Huiying ZouState Key Laboratory of Agrobiotechnology, College of Biological Sciences, China Agricultural University, 100193 Beijing, China.
Tao FengCollege of Veterinary Medicine, China Agricultural University, 100193 Beijing, China.
Lei ChenChongqing Academy of Animal Science, 402460 Chongqing, China.
Jia LiCenter for Epigenetics & Disease Prevention, Institute of Biosciences and Technology, College of Medicine, Texas A&M University, Houston, TX 77030.
Xiaolan QiCollege of Veterinary Medicine, China Agricultural University, 100193 Beijing, China.
Zhifang LiState Key Laboratory of Agrobiotechnology, College of Biological Sciences, China Agricultural University, 100193 Beijing, China.
Xiaoyue DuanState Key Laboratory of Agrobiotechnology, College of Biological Sciences, China Agricultural University, 100193 Beijing, China.
Chunlong XuState Key Laboratory of Agrobiotechnology, College of Biological Sciences, China Agricultural University, 100193 Beijing, China.
Liang ZhangChongqing Academy of Animal Science, 402460 Chongqing, China.
Xi LongChongqing Academy of Animal Science, 402460 Chongqing, China.
Jing LanChongqing Academy of Animal Science, 402460 Chongqing, China.
Chao ChenTang Tang Biomedical Technology (Beijing) Co., 100101 Beijing, China.
Chao WangDepartment of Computer and Technology, Tsinghua University, 100101 Beijing, China.
Xinyu XuSchool of Life Sciences, Tsinghua University, 100101 Beijing, China.
Jilong RenState Key Laboratory of Stem Cell and Reproductive Biology, Institute of Zoology, Chinese Academy of Sciences, 100101 Beijing, China.
Yiqiang ZhaoState Key Laboratory of Agrobiotechnology, College of Biological Sciences, China Agricultural University, 100193 Beijing, China.
Xiaoxiang HuState Key Laboratory of Agrobiotechnology, College of Biological Sciences, China Agricultural University, 100193 Beijing, China.
Zhengxing LianCollege of Animal Science and Technology, China Agriculture University, 100193 Beijing, China.
Hongsheng MenRat Resource and Research Center, University of Missouri, Columbia, MO 65201.
Dengke PanEmbryo Biotechnology and Reproduction Laboratory, Institute of Animal Science, Chinese Academy of Agricultural Sciences, 100193 Beijing, China.
Ning LiState Key Laboratory of Agrobiotechnology, College of Biological Sciences, China Agricultural University, 100193 Beijing, China.
Mario R CapecchiDepartment of Human Genetics, University of Utah School of Medicine, Salt Lake City, UT 84112 mario.capecchi@genetics.utah.edu xuguangdu@cau.edu.cn yaofengzhao@cau.edu.cn swu@cau.edu.cn.
Xuguang DuState Key Laboratory of Agrobiotechnology, College of Biological Sciences, China Agricultural University, 100193 Beijing, China; mario.capecchi@genetics.utah.edu xuguangdu@cau.edu.cn yaofengzhao@cau.edu.cn swu@cau.edu.cn.
Yaofeng ZhaoState Key Laboratory of Agrobiotechnology, College of Biological Sciences, China Agricultural University, 100193 Beijing, China; mario.capecchi@genetics.utah.edu xuguangdu@cau.edu.cn yaofengzhao@cau.edu.cn swu@cau.edu.cn.
Sen WuState Key Laboratory of Agrobiotechnology, College of Biological Sciences, China Agricultural University, 100193 Beijing, China; mario.capecchi@genetics.utah.edu xuguangdu@cau.edu.cn yaofengzhao@cau.edu.cn swu@cau.edu.cn.ORCID 0000-0003-0764-6122
China Agricultural University · CNChongqing Academy of Animal Science · CNBeijing University of Agriculture · CNChinese Academy of Agricultural Sciences · CNChinese Academy of Sciences · CNTsinghua University · CNMissouri College · USPrevention Institute · USUniversity of Utah · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Substantial rates of fetal loss plague all in vitro procedures involving embryo manipulations, including human-assisted reproduction, and are especially problematic for mammalian cloning where over 90% of reconstructed nuclear transfer embryos are typically lost during pregnancy. However, the epigenetic mechanism of these pregnancy failures has not been well described. Here we performed methylome and transcriptome analyses of pig induced pluripotent stem cells and associated cloned embryos, and revealed that aberrant silencing of imprinted genes, in particular the retrotransposon-derived RTL1 gene, is the principal epigenetic cause of pregnancy failure. Remarkably, restoration of RTL1 expression in pig induced pluripotent stem cells rescued fetal loss. Furthermore, in other mammals, including humans, low RTL1 levels appear to be the main epigenetic cause of pregnancy failure.

Indexed as

AnimalsDNA MethylationEmbryo, MammalianEmbryo TransferFemaleGene Expression ProfilingGene Expression Regulation, DevelopmentalGenomic ImprintingInduced Pluripotent Stem CellsNuclear Transfer TechniquesPregnancyPregnancy ComplicationsRepressor ProteinsRetroelementsSwineRepressor ProteinsRetroelementsDNA methylationgenomic imprintingnuclear transferpregnancy failureRTL1

Identifiers

PMID30381455
PMCPMC6255163
OpenAlexW2899248300

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.