Evidence map›Paper›PMID 30380600›Full record

ArticleMolecules (Basel, Switzerland)2018

An In Silico Study of the Antioxidant Ability for Two Caffeine Analogs Using Molecular Docking and Quantum Chemical Methods.

Josivan da Silva Costa, Ryan da Silva Ramos, Karina da Silva Lopes Costa, Davi do Socorro Barros Brasil, Carlos Henrique Tomich de Paula da Silva, Elenilze Figueiredo Batista Ferreira, Rosivaldo Dos Santos Borges, Joaquín María Campos, Williams Jorge da Cruz Macêdo, Cleydson Breno Rodrigues Dos Santos

Open access · goldAbstract read
In one paragraph

Article in Molecules (Basel, Switzerland), 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 65 citations in OpenAlex.

  1. Babassu (Foods (Basel, Switzerland) · 2026
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  3. Density Functional Theory, Molecular Docking Study, andBiochemistry research international · 2025
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  6. Synthesis and Structure of Novel Hybrid Compounds Containing Phthalazin-1(2International journal of molecular sciences · 2024
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  11. Assessment of the Antioxidant and Antimicrobial Potential ofAntibiotics (Basel, Switzerland) · 2023
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  13. Antibacterial and Antioxidant Activity ofAntibiotics (Basel, Switzerland) · 2022
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  16. Myeloperoxidase Inhibitory and Antioxidant Activities of (Pharmaceuticals (Basel, Switzerland) · 2021
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  18. Review
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  20. Computational Approaches for Drug Discovery.Molecules (Basel, Switzerland) · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 2 countries.

Josivan da Silva CostaPostgraduate Program in Biotechnology and Biodiversity-Network BIONORTE, Federal University of Pará, Rua Augusto Corrêa, 01, Belém, Pará 66075110, Brazil. josivan.chemistry@gmail.com.ORCID 0000-0001-5069-5283
Ryan da Silva RamosLaboratory of Modeling and Computational Chemistry, Department of Biological Sciences, Federal University of Amapá, Rod. Juscelino Kubitschek, Km 02, s/n, Macapá, Amapá 68902-280, Brazil. ryanquimico@hotmail.com.ORCID 0000-0003-1802-1320
Karina da Silva Lopes CostaLaboratory of Modeling and Computational Chemistry, Department of Biological Sciences, Federal University of Amapá, Rod. Juscelino Kubitschek, Km 02, s/n, Macapá, Amapá 68902-280, Brazil. karinalopesfarm@gmail.com.
Davi do Socorro Barros BrasilInstitute of Technology, Federal University of Pará, Av. Augusto Corrêa, 01, Belém, Pará 66075-900, Brazil. davibb@ufpa.br.
Carlos Henrique Tomich de Paula da SilvaComputational Laboratory of Pharmaceutical Chemistry, Faculty of Pharmaceutical Sciences of Ribeirão Preto, São Paulo 14040-903, Brazil. tomich@fcfrp.usp.br.
Elenilze Figueiredo Batista FerreiraLaboratory of Modeling and Computational Chemistry, Department of Biological Sciences, Federal University of Amapá, Rod. Juscelino Kubitschek, Km 02, s/n, Macapá, Amapá 68902-280, Brazil. elenilze@yahoo.com.br.
Rosivaldo Dos Santos BorgesPostgraduate Program in Biotechnology and Biodiversity-Network BIONORTE, Federal University of Pará, Rua Augusto Corrêa, 01, Belém, Pará 66075110, Brazil. lqfmed@gmail.com.
Joaquín María CamposDepartment of Pharmaceutical and Organic Chemistry, University of Granada, Campus of Cartuja, 18071 Granada, Spain. jmcampos@ugr.es.ORCID 0000-0002-9035-8123
Williams Jorge da Cruz MacêdoPostgraduate Program in Biotechnology and Biodiversity-Network BIONORTE, Federal University of Pará, Rua Augusto Corrêa, 01, Belém, Pará 66075110, Brazil. williams.macedo@ufra.edu.br.
Cleydson Breno Rodrigues Dos SantosLaboratory of Modeling and Computational Chemistry, Department of Biological Sciences, Federal University of Amapá, Rod. Juscelino Kubitschek, Km 02, s/n, Macapá, Amapá 68902-280, Brazil. breno@unifap.br.ORCID 0000-0002-0271-335X
Universidade Federal Rural da Amazônia · BRUniversidad de Granada · ESUniversidade Federal do Amapá · BRUniversidade Federal do Pará · BRUniversidade de São Paulo · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The antioxidant activity of molecules constitutes an important factor for the regulation of redox homeostasis and reduction of the oxidative stress. Cells affected by oxidative stress can undergo genetic alteration, causing structural changes and promoting the onset of chronic diseases, such as cancer. We have performed an in silico study to evaluate the antioxidant potential of two molecules of the zinc database: ZINC08706191 (Z91) and ZINC08992920 (Z20). Molecular docking, quantum chemical calculations (HF/6-31G**) and Pearson's correlation have been performed. Molecular docking results of Z91 and Z20 showed both the lower binding affinity (BA) and inhibition constant (Ki) values for the receptor-ligand interactions in the three tested enzymes (cytochrome P450-CP450, myeloperoxidase-MP and NADPH oxidase-NO) than the control molecules (5-fluorouracil-FLU, melatonin-MEL and dextromethorphan-DEX, for each receptor respectively). Molecular descriptors were correlated with Ki and strong correlations were observed for the CP450, MP and NO receptors. These and other results attest the significant antioxidant ability of Z91 and Z20, that may be indicated for further analyses in relation to the control of oxidative stress and as possible antioxidant agents to be used in the pharmaceutical industry.

Indexed as

AntioxidantsCaffeineCatalytic DomainComputer SimulationEnzymesFebuxostatFluorouracilHydroxyureaMolecular Docking SimulationQuantum TheoryAntioxidantsCaffeineEnzymesFebuxostatFluorouracilHydroxyureazileutonantioxidant potentialbinding free energyfree radicalsmolecular descriptorsmolecular dockingoxidative stress

Identifiers

PMID30380600
PMCPMC6278550
OpenAlexW2899031923

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.