Evidence map›Paper›PMID 30380423›Full record

ArticleCell reports2018

Large Differences in Small RNA Composition Between Human Biofluids.

Paula M Godoy, Nirav R Bhakta, Andrea J Barczak, Hakan Cakmak, Susan Fisher, Tippi C MacKenzie, Tushar Patel, Richard W Price, James F Smith, Prescott G Woodruff and 1 more

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 161 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
161citing papers in PubMed, 1 pooled it
8.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

161 citing papers in PubMed, 1 synthesis or guideline pooled it, 252 citations in OpenAlex.

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  18. Unlocking the role of tRNA-derived fragments in shaping breast cancer signaling.Naunyn-Schmiedeberg's archives of pharmacology · 2025
    Review
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101 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Paula M GodoyLung Biology Center, University of California, San Francisco, UCSF Box 3118, San Francisco, CA 94143, USA.
Nirav R BhaktaDivision of Pulmonary, Critical Care, Allergy and Sleep Medicine, Department of Medicine, University of California, San Francisco, UCSF Box 0130, San Francisco, CA 94143, USA.
Andrea J BarczakLung Biology Center, University of California, San Francisco, UCSF Box 3118, San Francisco, CA 94143, USA.
Hakan CakmakDepartment of Obstetrics, Gynecology & Reproductive Sciences, University of California, San Francisco, UCSF Box 0916, San Francisco, CA 94143, USA.
Susan FisherDepartment of Obstetrics, Gynecology & Reproductive Sciences, University of California, San Francisco, UCSF Box 0916, San Francisco, CA 94143, USA.
Tippi C MacKenzieDepartment of Surgery, University of California, San Francisco, UCSF Box 0570, San Francisco, CA 94143, USA.
Tushar PatelDepartment of Transplantation, Mayo Clinic, 4500 San Pablo Road, Jacksonville, FL 32224, USA.
Richard W PriceDepartment of Neurology, University of California, San Francisco, UCSF Box 0870, San Francisco, CA 94143, USA.
James F SmithDepartment of Urology, University of California, San Francisco, UCSF Box 1695, San Francisco, CA 94143, USA.
Prescott G WoodruffDivision of Pulmonary, Critical Care, Allergy and Sleep Medicine, Department of Medicine, University of California, San Francisco, UCSF Box 0130, San Francisco, CA 94143, USA; Cardiovascular Research Institute, University of California, San Francisco, UCSF Box 0130, San Francisco, CA 94143, USA.
David J ErleLung Biology Center, University of California, San Francisco, UCSF Box 3118, San Francisco, CA 94143, USA; Cardiovascular Research Institute, University of California, San Francisco, UCSF Box 0130, San Francisco, CA 94143, USA. Electronic address: david.erle@ucsf.edu.
University of California, San Francisco · USMayo Clinic in Florida · US

Funding

Defining A Comprehensive Reference Profile of Circulating Human Extracellular RNAU01HL126493 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ERLE, DAVID J, WOODRUFF, PRESCOTT G · 2014 to 2018
$3.5M
Extracellular non-coding RNA biomarkers of hepatocellular cancerUH3TR000884 · NCATS · MAYO CLINIC JACKSONVILLE · PI PATEL, TUSHAR · 2015 to 2017
$3.0M
Mentoring Research in Precision Medicine for Lung DiseaseK24HL137013 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI PRESCOTT G WOODRUFF · 2017 to 2026
$1.2M
Extracellular non-coding RNA biomarkers of hepatocellular cancerUH2TR000884 · NCATS · MAYO CLINIC JACKSONVILLE · PI PATEL, TUSHAR · 2013 to 2014
$989k
NCATS NIH HHS UH2 TR000884NCATS NIH HHS UH3 TR000884NHLBI NIH HHS K24 HL137013NHLBI NIH HHS U01 HL126493
6 · The paper itself

Abstract

Extracellular microRNAs (miRNAs) and other small RNAs are implicated in cellular communication and may be useful as disease biomarkers. We systematically compared small RNAs in 12 human biofluid types using RNA sequencing (RNA-seq). miRNAs and tRNA-derived RNAs (tDRs) accounted for the majority of mapped reads in all biofluids, but the ratio of miRNA to tDR reads varied from 72 in plasma to 0.004 in bile. miRNA levels were highly correlated across all biofluids, but levels of some miRNAs differed markedly between biofluids. tDR populations differed extensively between biofluids. Y RNA fragments were seen in all biofluids and accounted for >10% of reads in blood plasma, serum, and cerebrospinal fluid (CSF). Reads mapping exclusively to Piwi-interacting RNAs (piRNAs) were very rare, except in seminal plasma. These results demonstrate extensive differences in small RNAs between human biofluids and provide a useful resource for investigating extracellular RNA biology and developing biomarkers.

Indexed as

AdultAmino AcidsAnticodonBody FluidsFemaleHumansMaleMicroRNAsMiddle AgedRNA, Small InterferingRNA, TransferSequence Analysis, RNAAmino AcidsAnticodonMicroRNAsRNA, Small InterferingRNA, Transferbiofluidsextracellular RNAmiRNAtRNAY RNA

Identifiers

PMID30380423
PMCPMC6261476
OpenAlexW2793056024

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.