Evidence map›Paper›PMID 30380414›Full record

ArticleCell reports2018

DAZL Regulates Germ Cell Survival through a Network of PolyA-Proximal mRNA Interactions.

Leah L Zagore, Thomas J Sweet, Molly M Hannigan, Sebastien M Weyn-Vanhentenryck, Raul Jobava, Maria Hatzoglou, Chaolin Zhang, Donny D Licatalosi

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed
4.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 86 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Leah L ZagoreCenter for RNA Science and Therapeutics, Case Western Reserve University, Cleveland, OH 44106, USA.
Thomas J SweetCenter for RNA Science and Therapeutics, Case Western Reserve University, Cleveland, OH 44106, USA.
Molly M HanniganCenter for RNA Science and Therapeutics, Case Western Reserve University, Cleveland, OH 44106, USA.
Sebastien M Weyn-VanhentenryckCenter for Motor Neuron Biology and Disease, Columbia University, New York, NY 10032, USA.
Raul JobavaDepartment of Genetics and Genome Sciences, Case Western Reserve University, Cleveland, OH 44106, USA.
Maria HatzoglouDepartment of Genetics and Genome Sciences, Case Western Reserve University, Cleveland, OH 44106, USA.
Chaolin ZhangCenter for Motor Neuron Biology and Disease, Columbia University, New York, NY 10032, USA.
Donny D LicatalosiCenter for RNA Science and Therapeutics, Case Western Reserve University, Cleveland, OH 44106, USA. Electronic address: ddl33@case.edu.
Case Western Reserve University · USColumbia University · US

Funding

GRADUATE TRAINING IN CELLULAR AND MOLECULAR BIOLOGYT32GM008056 · NIGMS · CASE WESTERN RESERVE UNIVERSITY · PI DIEHL, JOHN ALAN, SNIDER, MARTIN D · 1985 to 2019
$7.1M
Ptbp2 function and global mRNA regulation during mammalian cell developmentR01GM107331 · NIGMS · CASE WESTERN RESERVE UNIVERSITY · PI LICATALOSI, DONNY D · 2013 to 2022
$2.8M
NIGMS NIH HHS R01 GM107331NIGMS NIH HHS T32 GM008056
6 · The paper itself

Abstract

The RNA binding protein DAZL is essential for gametogenesis, but its direct in vivo functions, RNA targets, and the molecular basis for germ cell loss in Dazl-null mice are unknown. Here, we mapped transcriptome-wide DAZL-RNA interactions in vivo, revealing DAZL binding to thousands of mRNAs via polyA-proximal 3' UTR interactions. In parallel, fluorescence-activated cell sorting and RNA-seq identified mRNAs sensitive to DAZL deletion in male germ cells. Despite binding a broad set of mRNAs, integrative analyses indicate that DAZL post-transcriptionally controls only a subset of its mRNA targets, namely those corresponding to a network of genes that are critical for germ cell proliferation and survival. In addition, we provide evidence that polyA sequences have key roles in specifying DAZL-RNA interactions across the transcriptome. Our results reveal a mechanism for DAZL-RNA binding and illustrate that DAZL functions as a master regulator of a post-transcriptional mRNA program essential for germ cell survival.

Indexed as

3' Untranslated Regions5' Untranslated RegionsAgingAnimalsBase SequenceBinding SitesCell CycleCell SurvivalFemaleGene Expression RegulationGene Regulatory NetworksGerm CellsMaleMice, Inbred C57BLPoly AProtein Binding3' Untranslated Regions5' Untranslated RegionsDAZL protein, mousePoly ARNA-Binding ProteinsRNA, Messenger3′ UTRDAZLgerm cell survivalpost-transcriptional regulationRNA binding proteinRNA networksspermatogenesis

Identifiers

PMID30380414
PMCPMC6878787
OpenAlexW2952593853

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.