Evidence map›Paper›PMID 30379910›Full record

ArticlePloS one2018

Future-proofing the Cenozoic macroperforate planktonic foraminifera phylogeny of Aze & others (2011).

Barry G Fordham, Tracy Aze, Christian Haller, Abdullah Khan Zehady, Paul N Pearson, James G Ogg, Bridget S Wade

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
3.9field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 6 institutions in 3 countries.

Barry G FordhamResearch School of Earth Sciences, Australian National University, Canberra, ACT, Australia.ORCID 0000-0003-4825-1987
Tracy AzeSchool of Earth and Environment, University of Leeds, Leeds, United Kingdom.
Christian HallerCollege of Marine Science, University of South Florida, St. Petersburg, Florida, United States of America.ORCID 0000-0002-2905-2598
Abdullah Khan ZehadyDepartment of Earth, Atmospheric, and Planetary Sciences, Purdue University, West Lafayette, Indiana, United States of America.
Paul N PearsonSchool of Earth and Ocean Sciences, Cardiff University, Cardiff, United Kingdom.
James G OggDepartment of Earth, Atmospheric, and Planetary Sciences, Purdue University, West Lafayette, Indiana, United States of America.ORCID 0000-0001-5716-3511
Bridget S WadeDepartment of Earth Sciences, University College London, London, United Kingdom.ORCID 0000-0002-7245-8614
Purdue University West Lafayette · USAustralian National University · AUCardiff University · GBUniversity College London · GBUniversity of Leeds · GBUniversity of South Florida St. Petersburg · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The unique macroevolutionary dataset of Aze & others has been transferred onto the TimeScale Creator visualisation platform while, as much as practicable, preserving the original unrevised content of its morphospecies and lineage evolutionary trees. This is a "Corrected Version" (not a revision), which can serve as an on-going historical case example because it is now updatable with future time scales. Both macroevolutionary and biostratigraphic communities are now equipped with an enduring phylogenetic database of Cenozoic macroperforate planktonic foraminiferal morphospecies and lineages for which both graphics and content can be visualised together. Key to maintaining the currency of the trees has been specification of time scales for sources of stratigraphic ranges; these scales then locate the range dates within the calibration series. Some ranges or their sources have undergone mostly minor corrections or amendments. Links between lineage and morphospecies trees have been introduced to improve consistency and transparency in timing within the trees. Also, Aze & others' dual employment of morphospecies and lineage concepts is further elaborated here, given misunderstandings that have ensued. Features displayed on the trees include options for line styles for additional categories for range extensions or degrees of support for ancestor-descendant proposals; these have been applied to a small number of instances as an encouragement to capture more nuanced data in the future. In addition to labeling of eco- and morpho-groups on both trees, genus labels can be attached to the morphospecies tree to warn of polyphyletic morphogenera, and the lineage codes have been decoded to ease their recognition. However, it is the mouse-over pop-ups that provide the greatest opportunity to embed supporting information in the trees. They include details for stratigraphic ranges and their recalibration steps, positions relative to the standard planktonic-foraminiferal zonation, and applications as datums, as well as mutual listings between morphospecies and lineages which ease the tracing of their interrelated contents. The elaboration of the original dataset has been captured in a relational database, which can be considered a resource in itself, and, through queries and programming, serves to generate the TimeScale Creator datapacks.

Indexed as

AnimalsBiodiversityBiological EvolutionForaminiferaMicePhylogenyPlankton

Identifiers

PMID30379910
PMCPMC6209145
OpenAlexW2898923332

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.