Evidence map›Paper›PMID 30379876›Full record

ArticlePloS one2018

Crystal structure and functional characterization of a cold-active acetyl xylan esterase (PbAcE) from psychrophilic soil microbe Paenibacillus sp.

Sun-Ha Park, Wanki Yoo, Chang Woo Lee, Chang Sook Jeong, Seung Chul Shin, Han-Woo Kim, Hyun Park, Kyeong Kyu Kim, T Doohun Kim, Jun Hyuck Lee

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
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  4. Feruloyl Esterase (International journal of molecular sciences · 2023
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  10. Article
  11. Characterization and Immobilization of a Novel SGNH Family Esterase (International journal of molecular sciences · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Sun-Ha ParkUnit of Polar Genomics, Korea Polar Research Institute, Incheon, Republic of Korea.
Wanki YooDepartment of Chemistry, College of Natural Science, Sookmyung Woman's University, Seoul, Republic of Korea.
Chang Woo LeeUnit of Polar Genomics, Korea Polar Research Institute, Incheon, Republic of Korea.
Chang Sook JeongUnit of Polar Genomics, Korea Polar Research Institute, Incheon, Republic of Korea.
Seung Chul ShinUnit of Polar Genomics, Korea Polar Research Institute, Incheon, Republic of Korea.
Han-Woo KimUnit of Polar Genomics, Korea Polar Research Institute, Incheon, Republic of Korea.
Hyun ParkUnit of Polar Genomics, Korea Polar Research Institute, Incheon, Republic of Korea.
Kyeong Kyu KimDepartment of Molecular Cell Biology, Samsung Biomedical Research Institute, Sungkyunkwan University School of Medicine, Suwon, Korea.
T Doohun KimDepartment of Chemistry, College of Natural Science, Sookmyung Woman's University, Seoul, Republic of Korea.
Jun Hyuck LeeUnit of Polar Genomics, Korea Polar Research Institute, Incheon, Republic of Korea.ORCID 0000-0002-4831-2228
Korea Polar Research Institute · KRSamsung (South Korea) · KRSookmyung Women's University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cold-active acetyl xylan esterases allow for reduced bioreactor heating costs in bioenergy production. Here, we isolated and characterized a cold-active acetyl xylan esterase (PbAcE) from the psychrophilic soil microbe Paenibacillus sp. R4. The enzyme hydrolyzes glucose penta-acetate and xylan acetate, reversibly producing acetyl xylan from xylan, and it shows higher activity at 4°C than at 25°C. We solved the crystal structure of PbAcE at 2.1-Å resolution to investigate its active site and the reason for its low-temperature activity. Structural analysis showed that PbAcE forms a hexamer with a central substrate binding tunnel, and the inter-subunit interactions are relatively weak compared with those of its mesophilic and thermophilic homologs. PbAcE also has a shorter loop and different residue composition in the β4-α3 and β5-α4 regions near the substrate binding site. Flexible subunit movements and different active site loop conformations may enable the strong low-temperature activity and broad substrate specificity of PbAcE. In addition, PbAcE was found to have strong activity against antibiotic compound substrates, such as cefotaxime and 7-amino cephalosporanic acid (7-ACA). In conclusion, the PbAcE structure and our biochemical results provide the first example of a cold-active acetyl xylan esterase and a starting template for structure-based protein engineering.

Indexed as

Cold TemperatureAcetylesteraseAmino Acid SequenceCatalytic DomainCrystallography, X-RayModels, MolecularPaenibacillusSequence AlignmentSubstrate SpecificityAcetylesteraseacetylxylan esterase

Identifiers

PMID30379876
PMCPMC6209228
OpenAlexW2899118933

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.