Evidence map›Paper›PMID 30379851›Full record

ArticlePloS one2018

Identification of Plasmodium falciparum nuclear proteins by mass spectrometry and proposed protein annotation.

Sylvie Briquet, Asma Ourimi, Cédric Pionneau, Juliana Bernardes, Alessandra Carbone, Solenne Chardonnet, Catherine Vaquero

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 20 citations in OpenAlex.

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  11. Preparing for Transmission: Gene Regulation inFrontiers in cellular and infection microbiology · 2020
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Sylvie BriquetSorbonne Université, INSERM, CNRS, Centre d'immunologie et des maladies infectieuses, CIMI-Paris, Paris, France.
Asma OurimiSorbonne Université, INSERM, CNRS, Centre d'immunologie et des maladies infectieuses, CIMI-Paris, Paris, France.
Cédric PionneauSorbonne Université, INSERM, UMS Omique, Plateforme Post-génomique de la Pitié-Salpêtrière, Paris, France.
Juliana BernardesSorbonne Université, CNRS, IBPS, Laboratoire de Biologie Computationnelle et Quantitative (LCQB), 4 place Jussieu, Paris, France.
Alessandra CarboneSorbonne Université, CNRS, IBPS, Laboratoire de Biologie Computationnelle et Quantitative (LCQB), 4 place Jussieu, Paris, France.ORCID 0000-0003-2098-5743
Solenne ChardonnetSorbonne Université, INSERM, UMS Omique, Plateforme Post-génomique de la Pitié-Salpêtrière, Paris, France.
Catherine VaqueroSorbonne Université, INSERM, CNRS, Centre d'immunologie et des maladies infectieuses, CIMI-Paris, Paris, France.ORCID 0000-0001-9224-822X
Centre National de la Recherche Scientifique · FRInserm · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The nuclear proteome of Plasmodium falciparum results from the continual shuttle of proteins between the cell cytoplasm-nucleus and vice versa. Using shotgun proteomics tools, we explored the nuclear proteins of mixed populations of Plasmodium falciparum extracted from infected erythrocytes. We combined GeLC-MS/MS and 2D-LC-MS/MS with a peptide ion exclusion procedure in order to increase the detection of low abundant proteins such as those involved in gene expression. We have identified 446 nuclear proteins covering all expected nuclear protein families involved in gene regulation. All structural ribosomal (40S and 60S) proteins were identified which is consistent with the nuclear localization of ribosomal biogenesis. Proteins involved in the translation machinery were also found suggesting that translational events might occur in the nucleus in P. falciparum as previously hypothesized in eukaryotes. These data were compared to the protein list established by PlasmoDB and submitted to Plasmobase a recently reported Plasmodium annotation website to propose new functional putative annotation of several unknown proteins found in the nuclear extracts.

Indexed as

Chromatography, LiquidCytoplasmGene ExpressionNuclear ProteinsPlasmodium falciparumProteomeProteomicsProtozoan ProteinsRibosomal ProteinsTandem Mass SpectrometryNuclear ProteinsProteomeProtozoan ProteinsRibosomal Proteins

Identifiers

PMID30379851
PMCPMC6209197
OpenAlexW2898934921

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.