Evidence map›Paper›PMID 30379099›Full record

ArticleAmerican journal of physiology. Renal physiology2019

Global polysome analysis of normal and injured podocytes.

Masahiro Okabe, Masaru Motojima, Yoichi Miyazaki, Ira Pastan, Takashi Yokoo, Taiji Matsusaka

Open access · bronzeAbstract read
In one paragraph

Article in American journal of physiology. Renal physiology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
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  6. LRG1 loss effectively restrains glomerular TGF-β signaling to attenuate diabetic kidney disease.Molecular therapy : the journal of the American Society of Gene Therapy · 2024
    Article
  7. Article
  8. Article
  9. Article
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  11. Article
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  13. Podocytes are lost from glomeruli before completing apoptosis.American journal of physiology. Renal physiology · 2022
    Article
  14. Article
  15. The Role ofNon-coding RNA · 2022
    Article
  16. Article
  17. Article
  18. Article
  19. Indirect podocyte injury manifested in a partial podocytectomy mouse model.American journal of physiology. Renal physiology · 2021
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Masahiro OkabeDivision of Nephrology and Hypertension, Department of Internal Medicine, The Jikei University School of Medicine , Tokyo , Japan.
Masaru MotojimaDepartment of Clinical Pharmacology, Tokai University School of Medicine , Isehara , Japan.
Yoichi MiyazakiDivision of Nephrology and Hypertension, Department of Internal Medicine, The Jikei University School of Medicine , Tokyo , Japan.
Ira PastanLaboratory of Molecular Biology, Center for Cancer Research, National Cancer Institute, National Institutes of Health , Bethesda, Maryland.
Takashi YokooDivision of Nephrology and Hypertension, Department of Internal Medicine, The Jikei University School of Medicine , Tokyo , Japan.
Taiji MatsusakaDepartment of Basic Medicine, Tokai University School of Medicine , Isehara , Japan.
Tokai University · JPJikei University School of Medicine · JPCenter for Cancer Research · US

Funding

Growth Regulation SectionZIABC010298 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI PASTAN, IRA · 2009 to 2023
$5.0M
6 · The paper itself

Abstract

Podocyte injury is a key event for progressive renal failure. We have previously established a mouse model of inducible podocyte injury (NEP25) that progressively develops glomerulosclerosis after immunotoxin injection. We performed polysome analysis of intact and injured podocytes utilizing the NEP25 and RiboTag transgenic mice, in which a hemagglutinin tag is attached to ribosomal protein L22 selectively in podocytes. Podocyte-specific polysomes were successfully obtained by immunoprecipitation with an antihemagglutinin antibody from glomerular homogenate and analyzed using a microarray. Compared with glomerular cells, 353 genes were highly expressed and enriched in podocytes; these included important podocyte genes and also heretofore uncharacterized genes, such as Dach1 and Foxd2. Podocyte injury by immunotoxin induced many genes to be upregulated, including inflammation-related genes despite no infiltration of inflammatory cells in the glomeruli. MafF and Egr-1, which structurally have the potential to antagonize MafB and WT1, respectively, were rapidly and markedly increased in injured podocytes before MafB and WT1 were decreased. We demonstrated that Maff and Egr1 knockdown increased the MafB targets Nphs2 and Ptpro and the WT1 targets Ptpro, Nxph3, and Sulf1, respectively. This indicates that upregulated MafF and Egr-1 may promote deterioration of podocytes by antagonizing MafB and WT1. Our systematic microarray study of the heretofore undescribed behavior of podocyte genes may open new insights into the understanding of podocyte pathophysiology.

Indexed as

Oligonucleotide Array Sequence AnalysisTranscriptomeAnimalsCells, CulturedDisease Models, AnimalGene Expression ProfilingGenetic Predisposition to DiseaseGlomerulosclerosis, Focal SegmentalInterleukin-2 Receptor alpha SubunitMembrane ProteinsMice, TransgenicPhenotypePodocytesPolyribosomesRenal Insufficiency, ChronicIL2RA protein, humanInterleukin-2 Receptor alpha SubunitMembrane Proteinsnephrinchronic kidney diseasefocal segmental glomerulosclerosisgene expressionpodocyte

Identifiers

PMID30379099
PMCPMC6442397
OpenAlexW2899323746

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.