Evidence map›Paper›PMID 30377626›Full record

ArticleOpen forum infectious diseases2018

Environmental Surveillance Reveals Complex Enterovirus Circulation Patterns in Human Populations.

Manasi Majumdar, Salmaan Sharif, Dimitra Klapsa, Thomas Wilton, Muhammad Masroor Alam, Maria Dolores Fernandez-Garcia, Lubna Rehman, Ghulam Mujtaba, Gina McAllister, Heli Harvala and 6 more

Open access · goldAbstract read
In one paragraph

Article in Open forum infectious diseases, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
4.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 58 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 4 institutions in 3 countries.

Manasi MajumdarDivision of Virology, National Institute for Biological Standards and Control (NIBSC), South Mimms, Potters Bar, Herts, United Kingdom.
Salmaan SharifNIH, Islamabad, Pakistan.
Dimitra KlapsaDivision of Virology, National Institute for Biological Standards and Control (NIBSC), South Mimms, Potters Bar, Herts, United Kingdom.
Thomas WiltonDivision of Virology, National Institute for Biological Standards and Control (NIBSC), South Mimms, Potters Bar, Herts, United Kingdom.
Muhammad Masroor AlamNIH, Islamabad, Pakistan.
Maria Dolores Fernandez-GarciaInstitut Pasteur, Dakar, Senegal.
Lubna RehmanNIH, Islamabad, Pakistan.
Ghulam MujtabaNIH, Islamabad, Pakistan.
Gina McAllisterEdinburgh Royal Infirmary, United Kingdom.
Heli HarvalaEdinburgh Royal Infirmary, United Kingdom.
Kate TempletonEdinburgh Royal Infirmary, United Kingdom.
Edward T MeeDivision of Virology, National Institute for Biological Standards and Control (NIBSC), South Mimms, Potters Bar, Herts, United Kingdom.
Humayun AsgharWorld Health Organization Eastern Mediterranean Regional Office, Amman, Jordan.
Kader NdiayeInstitut Pasteur, Dakar, Senegal.
Philip D MinorDivision of Virology, National Institute for Biological Standards and Control (NIBSC), South Mimms, Potters Bar, Herts, United Kingdom.
Javier MartinDivision of Virology, National Institute for Biological Standards and Control (NIBSC), South Mimms, Potters Bar, Herts, United Kingdom.
National Institute for Biological Standards and Control · GBNational Institute of Health · PKEdinburgh Royal Infirmary · GBInstitut Pasteur de Dakar · SN

Funding

World Health Organization 001
6 · The paper itself

Abstract

backgroundEnteroviruses are common human pathogens occasionally associated with severe disease, notoriously paralytic poliomyelitis caused by poliovirus. Other enterovirus serotypes such as enterovirus A71 and D68 have been linked to severe neurological syndromes. New enterovirus serotypes continue to emerge, some believed to be derived from nonhuman primates. However, little is known about the circulation patterns of many enterovirus serotypes and, in particular, the detailed enterovirus composition of sewage samples.

methodsWe used a next-generation sequencing approach analyzing reverse transcriptase polymerase chain reaction products synthesized directly from sewage concentrates.

resultsWe determined whole-capsid genome sequences of multiple enterovirus strains from all 4 A to D species present in environmental samples from the United Kingdom, Senegal, and Pakistan.

conclusionsOur results indicate complex enterovirus circulation patterns in human populations with differences in serotype composition between samples and evidence of sustained and widespread circulation of many enterovirus serotypes. Our analyses revealed known and divergent enterovirus strains, some of public health relevance and genetically linked to clinical isolates. Enteroviruses identified in sewage included vaccine-derived poliovirus and enterovirus D-68 stains, new enterovirus A71 and coxsackievirus A16 genogroups indigenous to Pakistan, and many strains from rarely reported serotypes. We show how this approach can be used for the early detection of emerging pathogens and to improve our understanding of enterovirus circulation in humans.

Indexed as

direct detectionenterovirus pathogenesisenvironmental surveillancehuman enterovirusnext-generation sequencing

Identifiers

PMID30377626
PMCPMC6201154
OpenAlexW2895399243

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.