Evidence map›Paper›PMID 30377383›Full record

ArticleGenetics in medicine : official journal of the American College of Medical Genetics2019

Biallelic sequence and structural variants in RAX2 are a novel cause for autosomal recessive inherited retinal disease.

Stijn Van de Sompele, Claire Smith, Marianthi Karali, Marta Corton, Kristof Van Schil, Frank Peelman, Timothy Cherry, Toon Rosseel, Hannah Verdin, Julien Derolez and 17 more

Erratum issuedOpen access · hybridAbstract read
In one paragraph

Article in Genetics in medicine : official journal of the American College of Medical Genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
0.6field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 20 citations in OpenAlex.

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  12. The rax homeobox gene is mutated in the eyeless axolotl, Ambystoma mexicanum.Developmental dynamics : an official publication of the American Association of Anatomists · 2021
    Article
  13. Next-Generation Sequencing Applications for Inherited Retinal Diseases.International journal of molecular sciences · 2021
    Review
  14. Review
  15. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

27 authors at 11 institutions in 5 countries.

Stijn Van de SompeleCenter for Medical Genetics, Ghent University and Ghent University Hospital, Ghent, Belgium.
Claire SmithSection of Ophthalmology and Neuroscience, School of Medicine, University of Leeds, St James's University Hospital, Leeds, UK.
Marianthi KaraliMedical Genetics, Department of Precision Medicine, Università degli Studi della Campania "Luigi Vanvitelli", Naples, Italy.
Marta CortonGenetics Department, Instituto de Investigación Sanitaria-Fundación Jimenez Diaz University Hospital (IIS-FJD, UAM), Madrid, Spain.
Kristof Van SchilCenter for Medical Genetics, Ghent University and Ghent University Hospital, Ghent, Belgium.
Frank PeelmanDepartment of Medical Protein Research, Faculty of Medicine and Health Sciences, Flanders Institute for Biotechnology (VIB), Ghent University, Ghent, Belgium.
Timothy CherryCenter for Developmental Biology and Regenerative Medicine, Seattle Children's Research Institute, Seattle, WA, USA.
Toon RosseelCenter for Medical Genetics, Ghent University and Ghent University Hospital, Ghent, Belgium.
Hannah VerdinCenter for Medical Genetics, Ghent University and Ghent University Hospital, Ghent, Belgium.
Julien DerolezCenter for Medical Genetics, Ghent University and Ghent University Hospital, Ghent, Belgium.
Thalia Van LaethemCenter for Medical Genetics, Ghent University and Ghent University Hospital, Ghent, Belgium.
Kamron N KhanDepartment of Ophthalmology, St. James's University Hospital, Leeds, UK.
Martin McKibbinDepartment of Ophthalmology, St. James's University Hospital, Leeds, UK.
Carmel ToomesSection of Ophthalmology and Neuroscience, School of Medicine, University of Leeds, St James's University Hospital, Leeds, UK.
Manir AliSection of Ophthalmology and Neuroscience, School of Medicine, University of Leeds, St James's University Hospital, Leeds, UK.
Annalaura TorellaMedical Genetics, Department of Precision Medicine, Università degli Studi della Campania "Luigi Vanvitelli", Naples, Italy.
Francesco TestaEye Clinic, Multidisciplinary Department of Medical, Surgical and Dental Sciences, Università degli Studi della Campania "Luigi Vanvitelli", Naples, Italy.
Belen JimenezDepartment of Ophthalmology, Fundación Jimenez Diaz University Hospital, Madrid, Spain.
Francesca SimonelliEye Clinic, Multidisciplinary Department of Medical, Surgical and Dental Sciences, Università degli Studi della Campania "Luigi Vanvitelli", Naples, Italy.
Julie De ZaeytijdDepartment of Ophthalmology, Ghent University and Ghent University Hospital, Ghent, Belgium.
Jenneke Van den EndeCenter for Medical Genetics, Antwerp University Hospital, Antwerp, Belgium.
Bart P LeroyCenter for Medical Genetics, Ghent University and Ghent University Hospital, Ghent, Belgium.
Frauke CoppietersCenter for Medical Genetics, Ghent University and Ghent University Hospital, Ghent, Belgium.
Carmen AyusoGenetics Department, Instituto de Investigación Sanitaria-Fundación Jimenez Diaz University Hospital (IIS-FJD, UAM), Madrid, Spain.
Chris F InglehearnSection of Ophthalmology and Neuroscience, School of Medicine, University of Leeds, St James's University Hospital, Leeds, UK.
Sandro BanfiMedical Genetics, Department of Precision Medicine, Università degli Studi della Campania "Luigi Vanvitelli", Naples, Italy. banfi@tigem.it.
Elfride De BaereCenter for Medical Genetics, Ghent University and Ghent University Hospital, Ghent, Belgium. elfride.debaere@ugent.be.
Ghent University Hospital · BESt James's University Hospital · GBUniversity of Campania "Luigi Vanvitelli" · ITAntwerp University Hospital · BEGhent University · BEHospital Universitario Fundación Jiménez Díaz · ESInstituto de Salud Carlos III · ESSeattle Children's Hospital · USTelethon Institute Of Genetics And Medicine · ITUniversidad Autónoma de Madrid · ESUniversity of Leeds · GB

Funding

Department of Health
6 · The paper itself

Abstract

purposeRAX2 encodes a homeobox-containing transcription factor, in which four monoallelic pathogenic variants have been described in autosomal dominant cone-dominated retinal disease.

methodsExome sequencing in a European cohort with inherited retinal disease (IRD) (n = 2086) was combined with protein structure modeling of RAX2 missense variants, bioinformatics analysis of deletion breakpoints, haplotyping of RAX2 variant c.335dup, and clinical assessment of biallelic RAX2-positive cases and carrier family members.

resultsBiallelic RAX2 sequence and structural variants were found in five unrelated European index cases, displaying nonsyndromic autosomal recessive retinitis pigmentosa (ARRP) with an age of onset ranging from childhood to the mid-40s (average mid-30s). Protein structure modeling points to loss of function of the novel recessive missense variants and to a dominant-negative effect of the reported dominant RAX2 alleles. Structural variants were fine-mapped to disentangle their underlying mechanisms. Haplotyping of c.335dup in two cases suggests a common ancestry.

conclusionThis study supports a role for RAX2 as a novel disease gene for recessive IRD, broadening the mutation spectrum from sequence to structural variants and revealing a founder effect. The identification of biallelic RAX2 pathogenic variants in five unrelated families shows that RAX2 loss of function may be a nonnegligible cause of IRD in unsolved ARRP cases.

Indexed as

AdultDNA Mutational AnalysisEye ProteinsFemaleGenes, RecessiveGenetic Association StudiesGenotypeHaplotypesHomeodomain ProteinsHumansMaleMiddle AgedMutationMutation, MissensePedigreePhenotypeEye ProteinsHomeodomain ProteinsRAX protein, humanTranscription Factorshomeobox-containing transcription factorloss of functionnovel ARRP geneRAX2retinitis pigmentosa

Identifiers

PMID30377383
PMCPMC6752271
OpenAlexW2899102087

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.