Evidence map›Paper›PMID 30377360›Full record

ArticleNature methods2018

FLIRT: fast local infrared thermogenetics for subcellular control of protein function.

Sophia M Hirsch, Sriramkumar Sundaramoorthy, Tim Davies, Yelena Zhuravlev, Jennifer C Waters, Mimi Shirasu-Hiza, Julien Dumont, Julie C Canman

Abstract read
In one paragraph

Article in Nature methods, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Quantum sensors for biomedical applications.Nature reviews. Physics · 2023
    Review
  7. Review
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Review
  14. Article
  15. Going with the flow: insights fromPhilosophical transactions of the Royal Society of London. Series B, Biological sciences · 2020
    Review
  16. Probing and manipulating embryogenesis via nanoscale thermometry and temperature control.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Sophia M HirschDepartment of Genetics and Development, Columbia University Medical Center, New York, NY, USA.ORCID http://orcid.org/0000-0003-0888-6689
Sriramkumar SundaramoorthyDepartment of Pathology and Cell Biology, Columbia University Medical Center, New York, NY, USA.
Tim DaviesDepartment of Pathology and Cell Biology, Columbia University Medical Center, New York, NY, USA.ORCID http://orcid.org/0000-0003-2247-9449
Yelena ZhuravlevDepartment of Genetics and Development, Columbia University Medical Center, New York, NY, USA.
Jennifer C WatersDepartment of Cell Biology, Harvard Medical School, Boston, MA, USA.
Mimi Shirasu-HizaDepartment of Genetics and Development, Columbia University Medical Center, New York, NY, USA.ORCID http://orcid.org/0000-0002-2730-1765
Julien DumontInstitut Jacques Monod, CNRS, UMR 7592, Université Paris Diderot, Sorbonne Paris Cité, Paris, France.ORCID http://orcid.org/0000-0001-5312-9770
Julie C CanmanDepartment of Pathology and Cell Biology, Columbia University Medical Center, New York, NY, USA. jcc2210@cumc.columbia.edu.ORCID http://orcid.org/0000-0001-8135-2072

Funding

PREDOCTORAL TRAINING GRANT IN HUMAN GENETICS &DEVELOPMET32GM007088 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI SHEN, MICHAEL M. · 1985 to 2020
$7.1M
Circadian-Regulated Aging PhysiologiesR01AG045842 · NIA · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Michele M Shirasu-Hiza · 2013 to 2026
$5.1M
Circadian regulation of physiological functionsR35GM127049 · NIGMS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Michele M Shirasu-Hiza · 2018 to 2026
$3.9M
Cell type-variation of cytokinesisR01GM117407 · NIGMS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI CANMAN, JULIE C · 2016 to 2023
$2.9M
IR-LAMP: Optigenetic technology to spatially manipulate protein function in vivoDP2OD008773 · OD · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI CANMAN, JULIE C · 2011 to 2011
$2.4M
Circadian regulation of phagocytosisR01GM105775 · NIGMS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI SHIRASU-HIZA, MICHELE M · 2013 to 2017
$1.6M
NIA NIH HHS R01 AG045842NIGMS NIH HHS R01 GM105775NIGMS NIH HHS R01 GM117407NIGMS NIH HHS R35 GM127049NIGMS NIH HHS T32 GM007088NIH HHS DP2 OD008773
6 · The paper itself

Abstract

FLIRT (fast local infrared thermogenetics) is a microscopy-based technology to locally and reversibly manipulate protein function while simultaneously monitoring the effects in vivo. FLIRT locally inactivates fast-acting temperature-sensitive mutant proteins. We demonstrate that FLIRT can control temperature-sensitive proteins required for cell division, Delta-Notch cell fate signaling, and germline structure in Caenorhabditis elegans with cell-specific and even subcellular precision.

Indexed as

Infrared RaysMutationTemperatureAnimalsCaenorhabditis elegansCaenorhabditis elegans ProteinsCell DifferentiationEmbryo, NonmammalianGene Expression RegulationGenetic TechniquesGerm CellsMicroscopyMolecular ImagingReceptors, NotchSignal TransductionCaenorhabditis elegans ProteinsReceptors, Notch

Identifiers

PMID30377360
PMCPMC6295154

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.