ArticleNature methods2018
A community-developed open-source computational ecosystem for big neuro data.
Abstract readLetter
In one paragraph
Article in Nature methods, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.
0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
–field-weighted citation impact
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
31 citing papers in PubMed.
- Generative AI as a transformational logic for cognitive neuroscience.Communications biology · 2026Review
- The Neuronal Golgi Network and Its Acolytes.Sub-cellular biochemistry · 2026Review
- PyReconstruct: A fully open-source, collaborative successor to Reconstruct.Proceedings of the National Academy of Sciences of the United States of America · 2025Article
- A software ecosystem for brain tractometry processing, analysis, and insight.PLoS computational biology · 2025Article
- Morphomics via next-generation electron microscopy.Journal of molecular cell biology · 2024Review
- Tractometry of the Human Connectome Project: resources and insights.Frontiers in neuroscience · 2024Article
- Ethics Along the Continuum of Research Involving Persons with Disorders of Consciousness.Neurocritical care · 2023Article
- Merged magnetic resonance and light sheet microscopy of the whole mouse brain.Proceedings of the National Academy of Sciences of the United States of America · 2023Article
- CLAIRE-Parallelized Diffeomorphic Image Registration for Large-Scale Biomedical Imaging Applications.Journal of imaging · 2022Article
- How innovations in methodology offer new prospects for volume electron microscopy.Journal of microscopy · 2022Review
- Recommendations for repositories and scientific gateways from a neuroscience perspective.Scientific data · 2022Article
- Is Neuroscience FAIR? A Call for Collaborative Standardisation of Neuroscience Data.Neuroinformatics · 2022Article
- Non-invasiveCell reports methods · 2022Article
- Connectomics Annotation Metadata Standardization for Increased Accessibility and Queryability.Frontiers in neuroinformatics · 2022Article
- The Brain Observatory Storage Service and Database (BossDB): A Cloud-Native Approach for Petascale Neuroscience Discovery.Frontiers in neuroinformatics · 2022Article
- Tentorial venous anatomy of mice and humans.JCI insight · 2021Article
- An Integrated Toolkit for Extensible and Reproducible Neuroscience.Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference · 2021Article
- CONFIRMS: A Toolkit for Scalable, Black Box Connectome Assessment and Investigation.Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference · 2021Article
- Cellular anatomy of the mouse primary motor cortex.Nature · 2021Article
- CloudReg: automatic terabyte-scale cross-modal brain volume registration.Nature methods · 2021Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
31 authors.
Joshua T VogelsteinJohns Hopkins University, Baltimore, MD, USA. jovo@jhu.edu.ORCID http://orcid.org/0000-0003-2487-6237
Eric PerlmanJohns Hopkins University, Baltimore, MD, USA.
Benjamin FalkJohns Hopkins University, Baltimore, MD, USA.
Alex BadenJohns Hopkins University, Baltimore, MD, USA.
William Gray RoncalApplied Physics Laboratory, Johns Hopkins University, Laurel, MD, USA.
Vikram ChandrashekharJohns Hopkins University, Baltimore, MD, USA.ORCID http://orcid.org/0000-0001-7478-5304
Forrest CollmanAllen Institute for Brain Sciences, Seattle, WA, USA.
Sharmishtaa SeshamaniAllen Institute for Brain Sciences, Seattle, WA, USA.
Jesse L PatsolicJohns Hopkins University, Baltimore, MD, USA.
Kunal LillaneyJohns Hopkins University, Baltimore, MD, USA.
Michael KazhdanJohns Hopkins University, Baltimore, MD, USA.
Robert HiderApplied Physics Laboratory, Johns Hopkins University, Laurel, MD, USA.
Derek PryorApplied Physics Laboratory, Johns Hopkins University, Laurel, MD, USA.
Jordan MatelskyApplied Physics Laboratory, Johns Hopkins University, Laurel, MD, USA.
Timothy GionApplied Physics Laboratory, Johns Hopkins University, Laurel, MD, USA.
Priya ManavalanApplied Physics Laboratory, Johns Hopkins University, Laurel, MD, USA.
Brock WesterApplied Physics Laboratory, Johns Hopkins University, Laurel, MD, USA.
Mark ChevilletFacebook, Menlo Park, CA, USA.
Eric T TrautmanJanelia Research Campus, Ashburn, VA, USA.
Khaled KhairyJanelia Research Campus, Ashburn, VA, USA.
Eric BridgefordJohns Hopkins University, Baltimore, MD, USA.
Dean M KleissasGigantum, Washington, DC, USA.
Daniel J TwardJohns Hopkins University, Baltimore, MD, USA.
Ailey K CrowStanford University, Stanford, CA, USA.
Brian HsuehStanford University, Stanford, CA, USA.
Matthew A WrightStanford University, Stanford, CA, USA.
Michael I MillerJohns Hopkins University, Baltimore, MD, USA.
Stephen J SmithAllen Institute for Brain Sciences, Seattle, WA, USA.
R Jacob VogelsteinGigantum, Washington, DC, USA.
Karl DeisserothStanford University, Stanford, CA, USA.
Randal BurnsJohns Hopkins University, Baltimore, MD, USA.
Funding
Training CoreP50DA042012 · NIDA · STANFORD UNIVERSITY · PI Karl A. Deisseroth, Lisa Giocomo · 2017 to 2026
$27.1MTR&D 4: Algorithms for functional and anatomical brain analysisP41EB015909 · NIBIB · HUGO W. MOSER RES INST KENNEDY KRIEGER · PI VAN ZIJL, PETER CM · 2012 to 2020
$13.1MSynaptomes of Mouse and ManR01NS092474 · NINDS · ALLEN INSTITUTE · PI BURNS, RANDAL, SMITH, STEPHEN J · 2014 to 2018
$8.7MNIBIB NIH HHS P41 EB015909NIDA NIH HHS P50 DA042012NINDS NIH HHS R01 NS092474
Abstract
PubMed holds no abstract for this paper.
Indexed as
Big DataDatabases, FactualEcosystemComputational BiologyHumansInformation Storage and RetrievalNerve NetNeural PathwaysNeuroimaging
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.