Evidence map›Paper›PMID 30377306›Full record

ArticleGenes and immunity2019

An IL7RA exon 5 polymorphism is associated with impaired IL-7Rα splicing and protection against tuberculosis in Ghana.

Christian Lundtoft, Anthony Afum-Adjei Awuah, Alptekin Güler, Kirstin Harling, Heiner Schaal, Ertan Mayatepek, Richard O Phillips, Norman Nausch, Ellis Owusu-Dabo, Marc Jacobsen

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In one paragraph

Article in Genes and immunity, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.7field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

Christian LundtoftDepartment of General Pediatrics, Neonatology, and Pediatric Cardiology, Medical Faculty, University Children's Hospital, Duesseldorf, Germany.
Anthony Afum-Adjei AwuahKumasi Centre for Collaborative Research in Tropical Medicine (KCCR), Kumasi, Ghana.
Alptekin GülerDepartment of General Pediatrics, Neonatology, and Pediatric Cardiology, Medical Faculty, University Children's Hospital, Duesseldorf, Germany.
Kirstin HarlingDepartment of General Pediatrics, Neonatology, and Pediatric Cardiology, Medical Faculty, University Children's Hospital, Duesseldorf, Germany.
Heiner SchaalInstitute of Virology, University Hospital Duesseldorf, Heinrich Heine University, Duesseldorf, Germany.
Ertan MayatepekDepartment of General Pediatrics, Neonatology, and Pediatric Cardiology, Medical Faculty, University Children's Hospital, Duesseldorf, Germany.
Richard O PhillipsKumasi Centre for Collaborative Research in Tropical Medicine (KCCR), Kumasi, Ghana.
Norman NauschDepartment of General Pediatrics, Neonatology, and Pediatric Cardiology, Medical Faculty, University Children's Hospital, Duesseldorf, Germany.ORCID http://orcid.org/0000-0002-9704-2148
Ellis Owusu-DaboKumasi Centre for Collaborative Research in Tropical Medicine (KCCR), Kumasi, Ghana.
Marc JacobsenDepartment of General Pediatrics, Neonatology, and Pediatric Cardiology, Medical Faculty, University Children's Hospital, Duesseldorf, Germany. marc.jacobsen@med.uni-duesseldorf.de.ORCID http://orcid.org/0000-0002-4703-5652
Düsseldorf University Hospital · DEKwame Nkrumah University of Science and Technology · GH

Funding

Medical Research Council MR/J01477X/1
6 · The paper itself

Abstract

Functional interleukin-7 receptor α-chain (IL-7Rα) genetic variants, which affect alternative splicing and expression of the soluble IL-7Rα, are associated with susceptibility to autoimmunity. We previously described aberrant IL-7Rα expression and impaired IL-7-mediated T-cell functions in tuberculosis patients. In the present study, we investigated a possible role of IL7RA gene variants. Six exonic IL7RA polymorphisms were genotyped and two minor alleles were found at lower frequencies in tuberculosis patients as compared to healthy contacts from Ghana (rs11567764, p = 0.002; rs1494558, p = 0.01). The rs11567764 polymorphism tags an IL7RA haplotype exclusively found in African populations and was predicted to affect splicing of exon 5. Reduced mRNA expression of the Δexon_5-6 variant was found in T-cells from carriers of the protective rs11567764 allele. Although we were not able to demonstrate the causative effect of rs11567764, our findings suggested functional implications of genetic variants on IL-7Rα splicing and with potential impact on T-cell protection against tuberculosis.

Indexed as

Polymorphism, Single NucleotideAllelesAlternative SplicingCD4-Positive T-LymphocytesExonsGhanaHaplotypesHEK293 CellsHumansReceptors, Interleukin-7Tuberculosisinterleukin-7 receptor, alpha chainReceptors, Interleukin-7

Identifiers

PMID30377306
OpenAlexW2899014770

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.