Evidence map›Paper›PMID 30377280›Full record

ArticlemBio2018

Combinatorial Loss of the Enzymatic Activities of Viral Uracil-DNA Glycosylase and Viral dUTPase Impairs Murine Gammaherpesvirus Pathogenesis and Leads to Increased Recombination-Based Deletion in the Viral Genome.

Qiwen Dong, Kyle R Smith, Darby G Oldenburg, Maxwell Shapiro, William R Schutt, Laraib Malik, Joshua B Plummer, Yunxiang Mu, Thomas MacCarthy, Douglas W White and 2 more

Open access · goldAbstract read
In one paragraph

Article in mBio, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.6field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Review
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Qiwen DongDepartment of Molecular Genetics and Microbiology, Stony Brook University, Stony Brook, New York, USA.
Kyle R SmithDepartment of Molecular Genetics and Microbiology, Stony Brook University, Stony Brook, New York, USA.
Darby G OldenburgGundersen Health System, La Crosse, Wisconsin, USA.
Maxwell ShapiroDepartment of Applied Mathematics and Statistics, Stony Brook University, Stony Brook, New York, USA.
William R SchuttDepartment of Molecular Genetics and Microbiology, Stony Brook University, Stony Brook, New York, USA.
Laraib MalikDepartment of Computer Science, Stony Brook University, Stony Brook, New York, USA.
Joshua B PlummerDepartment of Epigenetics and Molecular Carcinogenesis, Division of Science Park, The University of Texas M. D. Anderson Cancer Center, Smithville, Texas, USA.
Yunxiang MuDepartment of Epigenetics and Molecular Carcinogenesis, Division of Science Park, The University of Texas M. D. Anderson Cancer Center, Smithville, Texas, USA.
Thomas MacCarthyDepartment of Applied Mathematics and Statistics, Stony Brook University, Stony Brook, New York, USA.
Douglas W WhiteGundersen Health System, La Crosse, Wisconsin, USA.
Kevin M McBrideDepartment of Epigenetics and Molecular Carcinogenesis, Division of Science Park, The University of Texas M. D. Anderson Cancer Center, Smithville, Texas, USA.ORCID 0000-0001-9646-152X
Laurie T KrugDepartment of Molecular Genetics and Microbiology, Stony Brook University, Stony Brook, New York, USA laurie.krug@stonybrook.edu.ORCID 0000-0002-9648-522X
Stony Brook University · USThe University of Texas MD Anderson Cancer Center · USGundersen Health System · US

Funding

A combined computational and experimental approach to the evolution and role of the DNA sequence environment in targeting mutations to antibody V regionsR01AI132507 · NIAID · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI RIZZO, ROBERT C., SCHARFF, MATTHEW D · 2018 to 2022
$3.0M
Uracil DNA Glycosylases in Gammaherpesvirus Pathogenesis and B Cell DevelopmentR01AI125397 · NIAID · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI MCBRIDE, KEVIN MICHAEL · 2016 to 2020
$2.4M
High-throughput informatics for antibodiesR01GM111741 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI MACCARTHY, THOMAS · 2015 to 2018
$1.1M
NIAID NIH HHS R01 AI125397NIAID NIH HHS R01 AI132507NIGMS NIH HHS R01 GM111741
6 · The paper itself

Abstract

Misincorporation of uracil or spontaneous cytidine deamination is a common mutagenic insult to DNA. Herpesviruses encode a viral uracil-DNA glycosylase (vUNG) and a viral dUTPase (vDUT), each with enzymatic and nonenzymatic functions. However, the coordinated roles of these enzymatic activities in gammaherpesvirus pathogenesis and viral genomic stability have not been defined. In addition, potential compensation by the host UNG has not been examined

Indexed as

Gene DeletionGenomic InstabilityRecombination, GeneticAnimalsGenome, ViralHerpesviridae InfectionsLungMicePyrophosphatasesRhadinovirusRodent DiseasesUracil-DNA GlycosidaseVirulencedUTP pyrophosphatasePyrophosphatasesUracil-DNA GlycosidaseDNA replicationdUTPasegammaherpesvirusgenomic stabilityherpesviruseslatencylytic replicationuracil-DNA glycosylaseviral pathogenesisvirus-host interactions

Identifiers

PMID30377280
PMCPMC6212821
OpenAlexW2899257195

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.