Evidence map›Paper›PMID 30377154›Full record

ArticleG3 (Bethesda, Md.)2018

The Yeast DNA Damage Checkpoint Kinase Rad53 Targets the Exoribonuclease, Xrn1.

Jessica P Lao, Katie M Ulrich, Jeffrey R Johnson, Billy W Newton, Ajay A Vashisht, James A Wohlschlegel, Nevan J Krogan, David P Toczyski

Open access · goldAbstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.1field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
  2. Article
  3. The micromammals.G3 (Bethesda, Md.) · 2024
    Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. International journal of molecular sciences · 2022
    Review
  10. Rad53 arrests leading and lagging strand DNA synthesis via distinct mechanisms in response to DNA replication stress.BioEssays : news and reviews in molecular, cellular and developmental biology · 2022
    Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. DNA damage checkpoint and repair: From the budding yeastComputational and structural biotechnology journal · 2021
    Review
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Jessica P LaoDepartment of Biochemistry and Biophysics, University of California, San Francisco, CA 94158.
Katie M UlrichDepartment of Biochemistry and Biophysics, University of California, San Francisco, CA 94158.
Jeffrey R JohnsonDepartment of Cellular and Molecular Pharmacology, University of California, San Francisco, CA 94158.
Billy W NewtonDepartment of Cellular and Molecular Pharmacology, University of California, San Francisco, CA 94158.
Ajay A VashishtDepartment of Biological Chemistry, School of Medicine, University of California, Los Angeles, CA 90095.
James A WohlschlegelDepartment of Biological Chemistry, School of Medicine, University of California, Los Angeles, CA 90095.
Nevan J KroganDepartment of Cellular and Molecular Pharmacology, University of California, San Francisco, CA 94158.
David P ToczyskiDepartment of Biochemistry and Biophysics, University of California, San Francisco, CA 94158 dpt4darwin@gmail.com.
University of California, San Francisco · USUniversity of California, Los Angeles · US

Funding

Regulation by post-translation modifications in response to stressR35GM118104 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI TOCZYSKI, DAVID PAUL · 2016 to 2025
$7.2M
NIGMS NIH HHS R35 GM118104
6 · The paper itself

Abstract

The highly conserved DNA damage response (DDR) pathway monitors the genomic integrity of the cell and protects against genotoxic stresses. The apical kinases, Mec1 and Tel1 (ATR and ATM in human, respectively), initiate the DNA damage signaling cascade through the effector kinases, Rad53 and Chk1, to regulate a variety of cellular processes including cell cycle progression, DNA damage repair, chromatin remodeling, and transcription. The DDR also regulates other cellular pathways, but direct substrates and mechanisms are still lacking. Using a mass spectrometry-based phosphoproteomic screen in

Indexed as

Cell Cycle ProteinsCheckpoint Kinase 2DNA DamageDNA RepairExoribonucleasesPhosphorylationRNA, FungalRNA StabilitySaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSubstrate SpecificityCell Cycle ProteinsCheckpoint Kinase 2ExoribonucleasesRAD53 protein, S cerevisiaeRNA, FungalSaccharomyces cerevisiae ProteinsXRN1 protein, S cerevisiaecheckpointDNA Damage ResponsephosphoproteomicsRad53Xrn1

Identifiers

PMID30377154
PMCPMC6288840
OpenAlexW2898911827

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.