ArticlePloS one2018
Grapevine virus T diversity as revealed by full-length genome sequences assembled from high-throughput sequence data.
Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.
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Who cites it
14 citing papers in PubMed.
- Virome of the Russian Grapevine Germplasm: A Final Study and Summary.Plants (Basel, Switzerland) · 2026Article
- In-depth population genetic study ofFrontiers in plant science · 2025Article
- Grapevine Virome of the Don Ampelographic Collection in Russia Has Concealed Five Novel Viruses.Viruses · 2023Article
- The First Virome of a Russian Vineyard.Plants (Basel, Switzerland) · 2023Article
- Metagenomic Analysis of Ampelographic Collections of Dagestan Revealed the Presence of Two Novel Grapevine Viruses.Viruses · 2022Article
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- A New Jasmine Virus C Isolate Identified by Nanopore Sequencing Is Associated to Yellow Mosaic Symptoms ofPlants (Basel, Switzerland) · 2022Article
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- Viruses Without Borders: Global Analysis of the Population Structure, Haplotype Distribution, and Evolutionary Pattern of Iris Yellow Spot Orthotospovirus (FamilyFrontiers in microbiology · 2021Article
- Evidence of differential spreading events of grapevine pinot Gris virus in Italy using datamining as a tool.European journal of plant pathology · 2021Article
- Identification of Divergent Isolates of Banana Mild Mosaic Virus and Development of a New Diagnostic Primer to Improve Detection.Pathogens (Basel, Switzerland) · 2020Article
- A novel foveavirus identified in wild grapevine (Vitis vinifera subsp. sylvestris).Archives of virology · 2020Article
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Authors and funding
15 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
RNASeq or double-stranded RNA based approaches allowed the reconstruction of a total of 9 full-length or near full-length genomes of the recently discovered grapevine virus T (GVT). In addition, datamining of publicly available grapevine RNASeq transcriptome data allowed the reconstruction of a further 14 GVT genomes from five grapevine sources. Together with four GVT sequences available in Genbank, these novel sequences were used to analyse GVT diversity. GVT shows a very limited amount of indels variation but a high level of nucleotide and aminoacid polymorphism. This level is comparable to that shown in the closely related grapevine rupestris stem pitting-associated virus (GRSPaV). Further analyses showed that GVT mostly evolves under conservative selection pressure and that recombination has contributed to its evolutionary history. Phylogenetic analyses allow to identify at least seven clearly separated groups of GVT isolates. Analysis of the only reported PCR GVT-specific detection primer pair indicates that it is likely to fail to amplify some GVT isolates. Taken together these results point at the distinctiveness of GVT but also at the many points it shares with GRSPaV. They constitute the first pan-genomic analysis of the diversity of this novel virus.
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