Evidence map›Paper›PMID 30376021›Full record

ArticleLab on a chip2018

Integration of sample preparation and analysis into an optofluidic chip for multi-target disease detection.

Gopikrishnan G Meena, Aadhar Jain, Joshua W Parks, Alexandra Stambaugh, Jean L Patterson, Aaron R Hawkins, Holger Schmidt

Open access · greenAbstract read
In one paragraph

Article in Lab on a chip, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. One-sampling and Rapid Analysis of Cancer Biomarker on a Power-free and Low-cost Microfluidic Chip.Analytical sciences : the international journal of the Japan Society for Analytical Chemistry · 2021
    Article
  14. Review
  15. Optofluidic multiplex detection of single SARS-CoV-2 and influenza A antigens using a novel bright fluorescent probe assay.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  16. On-Chip Optical Detection of Viruses: A Review.Advanced photonics research · 2021
    Article
  17. Review
  18. Article
  19. Article
  20. Automated Optofluidic Analysis of Single Extracellular Vesicles for Organoid Culture Monitoring.IEEE journal of selected topics in quantum electronics : a publication of the IEEE Lasers and Electro-optics Society
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Gopikrishnan G MeenaSchool of Engineering, University of California Santa Cruz, 1156 High Street, Santa Cruz, CA 95064, USA. hschmidt@soe.ucsc.edu.
Aadhar JainSchool of Engineering, University of California Santa Cruz, 1156 High Street, Santa Cruz, CA 95064, USA. hschmidt@soe.ucsc.edu.ORCID 0000-0001-6085-0267
Joshua W ParksSchool of Engineering, University of California Santa Cruz, 1156 High Street, Santa Cruz, CA 95064, USA. hschmidt@soe.ucsc.edu.
Alexandra StambaughSchool of Engineering, University of California Santa Cruz, 1156 High Street, Santa Cruz, CA 95064, USA. hschmidt@soe.ucsc.edu.
Jean L PattersonDepartment of Virology and Immunology, Texas Biomedical Research Institute, 7620 NW Loop 410, San Antonio, TX 78227, USA.
Aaron R HawkinsECEn Department, Brigham Young University, 459 Clyde Building, Provo, UT 84602, USA.
Holger SchmidtSchool of Engineering, University of California Santa Cruz, 1156 High Street, Santa Cruz, CA 95064, USA. hschmidt@soe.ucsc.edu.
University of California, Santa Cruz · USBrigham Young University · USTexas Biomedical Research Institute · US

Funding

Multiplexed, Non-Amplified, Nucleic Acid-Based Identification of Multidrug Resistant Pathogens Using an Integrated Optofluidic PlatformR01AI116989 · NIAID · BRIGHAM YOUNG UNIVERSITY · PI HAWKINS, AARON R., PITT, WILLIAM G · 2015 to 2019
$5.4M
Hybrid integrated molecular analysis (HIMAS) for point-of-care diagnosticsR33AI100229 · NIAID · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI SCHMIDT, HOLGER · 2014 to 2016
$1.7M
NIAID NIH HHS R01 AI116989NIAID NIH HHS R33 AI100229
6 · The paper itself

Abstract

Detection of molecular biomarkers with high specificity and sensitivity from biological samples requires both sophisticated sample preparation and subsequent analysis. These tasks are often carried out on separate platforms which increases required sample volumes and the risk of errors, sample loss, and contamination. Here, we present an optofluidic platform which combines an optical detection section with single nucleic acid strand sensitivity, and a sample processing unit capable of on-chip, specific extraction and labeling of nucleic acid and protein targets in complex biological matrices. First, on-chip labeling and detection of individual lambda DNA molecules down to concentrations of 8 fM is demonstrated. Subsequently, we demonstrate the simultaneous capture, fluorescence tagging and detection of both Zika specific nucleic acid and NS-1 protein targets in both buffer and human serum. We show that the dual DNA and protein assay allows for successful differentiation and diagnosis of Zika against cross-reacting species like dengue.

Indexed as

DiagnosisLab-On-A-Chip DevicesOptical DevicesAnalytic Sample Preparation MethodsDimethylpolysiloxanesDNA, ViralEquipment DesignHumansLimit of DetectionNylonsZika VirusDimethylpolysiloxanesDNA, ViralNylonspoly(dimethylsiloxane)-polyamide copolymer

Identifiers

PMID30376021
PMCPMC6264894
OpenAlexW2897626976

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.