Evidence map›Paper›PMID 30375992›Full record

ArticleScientific data2018

LogMPIE, pan-India profiling of the human gut microbiome using 16S rRNA sequencing.

Ashok Kumar Dubey, Niyati Uppadhyaya, Pravin Nilawe, Neeraj Chauhan, Santosh Kumar, Urmila Anurag Gupta, Anirban Bhaduri

Abstract readDataset
In one paragraph

Article in Scientific data, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. The Indian gut microbiota-Is it unique?Indian journal of gastroenterology : official journal of the Indian Society of Gastroenterology · 2020
    Review
  16. Provitamin DScientific reports · 2019
    Article
  17. The internationalization of human microbiome research.Current opinion in microbiology · 2019
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Ashok Kumar DubeyInnovation Center, Tata Chemicals Ltd, Ambedveth, Pune, Maharashtra, 412111, India.
Niyati UppadhyayaInnovation Center, Tata Chemicals Ltd, Ambedveth, Pune, Maharashtra, 412111, India.
Pravin NilaweThermo Fisher Scientific, Invitrogen BioServices India Pvt Ltd, Mumbai, Maharashtra, 400076, India.
Neeraj ChauhanThermo Fisher Scientific, Life Science Solutions, Gurgaon, Haryana, 122016, India.
Santosh KumarJSS Medical Research India Pvt. Ltd, Faridabad, Haryana, 121003, India.
Urmila Anurag GuptaJSS Medical Research India Pvt. Ltd, Mumbai, Maharashtra, 400086, India.
Anirban BhaduriInnovation Center, Tata Chemicals Ltd, Ambedveth, Pune, Maharashtra, 412111, India.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The "Landscape Of Gut Microbiome - Pan-India Exploration", or LogMPIE study, is the first large-scale, nationwide record of the Indian gut microbiome. The primary objective of the study was to identify and map the Indian gut microbiome baseline. This observational study was conducted across 14 geographical locations in India. Enrolled subjects were uniformly distributed across geographies (north, east, west and south) and body mass index (obese and non-obese). Furthermore, factors influencing the microbiome, such as age and physical activity, were also considered in the study design. The LogMPIE study recorded data from 1004 eligible subjects and reported 993 unique microorganisms across the Indian microbiome diaspora. The data not only map the Indian gut microbiome baseline but also function as a useful resource to study, analyse and identify signatures characterizing the physiological dispositions of the subjects. Furthermore, they provide insight into the unique features describing the Indian microbiome. The data are open and may be accessed from the European Nucleotide Archive (ENA) portal of the European Bioinformatics Institute (https://www.ebi.ac.uk/ena/data/view/PRJEB25642).

Indexed as

Gastrointestinal MicrobiomeHigh-Throughput Nucleotide SequencingHumansIndiaMicrobiotaRNA, Ribosomal, 16SRNA, Ribosomal, 16S

Identifiers

PMID30375992
PMCPMC6207063

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.