Evidence map›Paper›PMID 30375424›Full record

ArticleScientific reports2018

Chemically monoubiquitinated PEX5 binds to the components of the peroxisomal docking and export machinery.

Vera Hagmann, Stefanie Sommer, Patrick Fabian, Jan Bierlmeier, Nadine van Treel, Henning D Mootz, Dirk Schwarzer, Jorge E Azevedo, Gabriele Dodt

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.3field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 10 citations in OpenAlex.

  1. Review
  2. Review
  3. The peroxisome: an update on mysteries 3.0.Histochemistry and cell biology · 2024
    Review
  4. Article
  5. Review
  6. Generation and Characterization of Site-Specifically Mono-Ubiquitylated p53.Chembiochem : a European journal of chemical biology · 2022
    Article
  7. Review
  8. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Vera HagmannInterfakultäres Institut für Biochemie (IFIB), Universität Tübingen, Tübingen, Germany.
Stefanie SommerInstitut für Biochemie, Universität Münster, Münster, Germany.
Patrick FabianInterfakultäres Institut für Biochemie (IFIB), Universität Tübingen, Tübingen, Germany.
Jan BierlmeierInterfakultäres Institut für Biochemie (IFIB), Universität Tübingen, Tübingen, Germany.ORCID http://orcid.org/0000-0002-7261-4744
Nadine van TreelInstitut für Biochemie, Universität Münster, Münster, Germany.
Henning D MootzInstitut für Biochemie, Universität Münster, Münster, Germany.
Dirk SchwarzerInterfakultäres Institut für Biochemie (IFIB), Universität Tübingen, Tübingen, Germany.
Jorge E AzevedoInstituto de Investigação e Inovação em Saúde (I3S), Instituto de Biologia Molecular e Celular (IBMC), and Instituto de Ciências Biomédicas Abel Salazar (ICBAS), University of Porto, Porto, Portugal.ORCID http://orcid.org/0000-0001-7714-5302
Gabriele DodtInterfakultäres Institut für Biochemie (IFIB), Universität Tübingen, Tübingen, Germany. gabriele.dodt@uni-tuebingen.de.
University of Tübingen · DEUniversity of Münster · DEUniversidade do Porto · PT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Peroxisomal matrix proteins contain either a peroxisomal targeting sequence 1 (PTS1) or a PTS2 that are recognized by the import receptors PEX5 and PEX7, respectively. PEX5 transports the PTS1 proteins and the PEX7/PTS2 complex to the docking translocation module (DTM) at the peroxisomal membrane. After cargo release PEX5 is monoubiquitinated and extracted from the peroxisomal membrane by the receptor export machinery (REM) comprising PEX26 and the AAA ATPases PEX1 and PEX6. Here, we investigated the protein interactions of monoubiquitinated PEX5 with the docking proteins PEX13, PEX14 and the REM. "Click" chemistry was used to synthesise monoubiquitinated recombinant PEX5. We found that monoubiquitinated PEX5 binds the PEX7/PTS2 complex and restores PTS2 protein import in vivo in ΔPEX5 fibroblasts. In vitro pull-down assays revealed an interaction of recombinant PEX5 and monoubiquitinated PEX5 with PEX13, PEX14 and with the REM components PEX1, PEX6 and PEX26. The interactions with the docking proteins were independent of the PEX5 ubiquitination status whereas the interactions with the REM components were increased when PEX5 is ubiquitinated.

Indexed as

Amino Acid SequenceAnimalsATPases Associated with Diverse Cellular ActivitiesClick ChemistryCytosolFibroblastsHumansMembrane ProteinsMiceMolecular Docking SimulationMutationPeroxisomal Targeting Signal 2 ReceptorPeroxisomal Targeting SignalsPeroxisomesPeroxisome-Targeting Signal 1 ReceptorProtein Interaction MapsATPases Associated with Diverse Cellular ActivitiesMembrane ProteinsPeroxisomal Targeting Signal 2 ReceptorPeroxisomal Targeting SignalsPeroxisome-Targeting Signal 1 ReceptorPEX1 protein, humanPEX26 protein, humanPEX5 protein, humanPEX6 protein, humanPEX7 protein, humanUbiquitin

Identifiers

PMID30375424
PMCPMC6207756
OpenAlexW2898397960

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.