Evidence map›Paper›PMID 30374741›Full record

ArticleMedical oncology (Northwood, London, England)2018

The Influence of Tumor Microenvironment on ATG4D Gene Expression in Colorectal Cancer Patients.

Justyna Gil, David Ramsey, Pawel Pawlowski, Elzbieta Szmida, Przemyslaw Leszczynski, Marek Bebenek, Maria M Sasiadek

Open access · hybridAbstract read
In one paragraph

Article in Medical oncology (Northwood, London, England), 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
7.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 52 citations in OpenAlex.

  1. Review
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  4. Autophagy Protease ATG4D Facilitates Proliferation and Malignancy of Osteosarcoma Cells.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2025
    Article
  5. Review
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  8. Review
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  14. Review
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  17. Article
  18. Article
  19. Article
  20. Association ofOncoimmunology · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Justyna GilDepartment of Genetics, Wroclaw Medical University, 50-368, Wroclaw, Poland. justyna.gil@umed.wroc.pl.ORCID http://orcid.org/0000-0003-0991-7686
David RamseyDepartment of Operations Research, Wroclaw University of Technology, 50-372, Wroclaw, Poland.
Pawel PawlowskiDepartment of Genetics, Wroclaw Medical University, 50-368, Wroclaw, Poland.
Elzbieta SzmidaDepartment of Genetics, Wroclaw Medical University, 50-368, Wroclaw, Poland.
Przemyslaw LeszczynskiDepartment of Biology and Medical Parasitology, Wroclaw Medical University, 50-345, Wroclaw, Poland.
Marek BebenekFirst Department of Surgical Oncology, Lower Silesian Oncology Center, 53-413, Wroclaw, Poland.
Maria M SasiadekDepartment of Genetics, Wroclaw Medical University, 50-368, Wroclaw, Poland.
Wroclaw Medical University · PLLublin Oncology Center · PLWrocław University of Science and Technology · PL

Funding

Narodowe Centrum Nauki DEC-2012/07/D/NZ5/04305
6 · The paper itself

Abstract

Despite great progress in research on the subject, the involvement of autophagy in colorectal cancer (CRC) pathogenesis (initiation, progression, metastasis) remains obscure and controversial. Autophagy is a catabolic process, fundamental to cell viability and connected with degradation/recycling of proteins and organelles. In this study, we aimed at investigating the relative expression level of mRNA via Real-Time PCR of 16 chosen genes belonging to Atg8 mammalian orthologs and their conjugation system, comprising GABARAP, GABARAPL1, GABARAPL2, MAP1LC3A, MAP1LC3B, MAP1LC3C, ATG3, ATG7, ATG10, ATG4A, ATG4B, ATG4C, ATG4D, and three genes encoding proteins building the multimeric ATG16L1 complex, namely ATG5, ATG12, and ATG16L1, in 73 colorectal tumors and paired adjacent normal colon mucosa. Our study demonstrated the relative downregulation of all examined genes in CRC tissues in comparison to adjacent noncancerous mucosa, with the highest rate of expression in both tumor and non-tumor tissues observed for GAPARBPL2 and the lowest for MAP1LC3C. Moreover, in patients with advanced-stage tumors and high values of regional lymph nodes, statistically significant downregulation of ATG4D expression in adjacent normal cells was observed. Our study confirms the role of autophagy genes as cancer suppressors in colorectal carcinogenesis. Furthermore, in regard to the ATG4D gene, we observed the influence of tumor microenvironments on gene expression in adjacent colon mucosa.

Indexed as

AutophagyTumor MicroenvironmentAutophagy-Related ProteinsBiomarkers, TumorCase-Control StudiesColorectal NeoplasmsCysteine EndopeptidasesFemaleFollow-Up StudiesHumansLiver NeoplasmsLymphatic MetastasisMalePrognosisATG4D protein, humanAutophagy-Related ProteinsBiomarkers, TumorCysteine EndopeptidasesATGAutophagyColorectal cancerGABARAPLC3Relative expression

Identifiers

PMID30374741
PMCPMC6208841
OpenAlexW2898684574

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.