Evidence map›Paper›PMID 30374464›Full record

ArticleCommunications biology2018

Whole-genome sequencing of esophageal adenocarcinoma in Chinese patients reveals distinct mutational signatures and genomic alterations.

James Y Dai, Xiaoyu Wang, Matthew F Buas, Chengjuan Zhang, Jie Ma, Bing Wei, Yin Li, Baosheng Zhao, Teresa S Hyun, Xueyan Chen and 7 more

Open access · goldAbstract read
In one paragraph

Article in Communications biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.5field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 14 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Esophageal carcinoma: Towards targeted therapies.Cellular oncology (Dordrecht, Netherlands) · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 7 institutions in 2 countries.

James Y DaiPublic Health Sciences Division, Fred Hutchinson Cancer Research Center, Seattle, 98109, WA, USA. jdai@fredhutch.org.
Xiaoyu WangPublic Health Sciences Division, Fred Hutchinson Cancer Research Center, Seattle, 98109, WA, USA.
Matthew F BuasDepartment of Cancer Prevention and Control, Roswell Park Cancer Institute, Buffalo, 14203, NY, USA.
Chengjuan ZhangDepartment of Molecular Pathology, The Affiliated Cancer Hospital of Zhengzhou University, Zhengzhou, 450008, He Nan Province, China.
Jie MaDepartment of Molecular Pathology, The Affiliated Cancer Hospital of Zhengzhou University, Zhengzhou, 450008, He Nan Province, China.
Bing WeiDepartment of Molecular Pathology, The Affiliated Cancer Hospital of Zhengzhou University, Zhengzhou, 450008, He Nan Province, China.
Yin LiDepartment of Thoracic Surgery, The Affiliated Cancer Hospital of Zhengzhou University, Zhengzhou, 450008, He Nan Province, China.
Baosheng ZhaoDepartment of Thoracic Surgery, The First Affiliated Hospital of Xinxiang Medical College, Xinxiang, 450008, He Nan Province, China.
Teresa S HyunClinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, 98109, WA, USA.
Xueyan ChenDepartment of Laboratory Medicine, University of Washington, Seattle, 98195, WA, USA.
Keith R LoebPublic Health Sciences Division, Fred Hutchinson Cancer Research Center, Seattle, 98109, WA, USA.
Robert OdzeDepartment of Pathology, Brigham and Women's Hospital, Boston, 02115, MA, USA.
Lena YaoVaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, 98109, WA, USA.
Xin SunInstitute of Occupational Health and Poison Control, Chinese Center for Disease Control and Prevention, Beijing, 100050, China.
Steve SelfVaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, 98109, WA, USA.
Thomas L VaughanPublic Health Sciences Division, Fred Hutchinson Cancer Research Center, Seattle, 98109, WA, USA.
Yongjun GuoDepartment of Molecular Pathology, The Affiliated Cancer Hospital of Zhengzhou University, Zhengzhou, 450008, He Nan Province, China. yongjunguo@hotmail.com.
Fred Hutch Cancer Center · USZhengzhou University · CNUniversity of Washington · USBrigham and Women's Hospital · USNational Institute for Occupational Health and Poison Control · CNRoswell Park Comprehensive Cancer Center · USXinxiang Medical University · CN

Funding

Developing Data-Driven Cancer ResearchersT32CA009168 · NCI · UNIVERSITY OF WASHINGTON · PI STEPHEN M SCHWARTZ, MICHAEL Chiao-An WU · 1985 to 2026
$10.1M
Use of Biomarkers in Diagnosis, Prognosis, Risk Prediction and Early Detection ofP01CA053996 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI PRENTICE, ROSS L · 1991 to 2015
$9.4M
Barrett's and Esophageal Adenocarcinoma Genetic Susceptibility Study (BEAGESS)R01CA136725 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI VAUGHAN, THOMAS L, WHITEMAN, DAVID C · 2009 to 2011
$7.8M
Statistical inference in genome-wide association and sequencing studiesR01HL114901 · NHLBI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI DAI, JAMES · 2012 to 2015
$1.7M
ESTABLISHED INVESTIGATOR AWARD IN CANCER PREVENTION AND CONTROLK05CA124911 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI VAUGHAN, THOMAS L · 2007 to 2016
$1.6M
FHCRC High-Performance Computing ClusterS10OD020069 · OD · FRED HUTCHINSON CANCER RESEARCH CENTER · PI KOOPERBERG, CHARLES L · 2015 to 2015
$600k
Genomic studies for understanding etiology of esophageal adenocarcinomaR21CA197502 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI DAI, JAMES · 2015 to 2016
$394k
NCI NIH HHS K05 CA124911NCI NIH HHS P01 CA053996NCI NIH HHS R01 CA136725NCI NIH HHS R21 CA197502NCI NIH HHS T32 CA009168NHLBI NIH HHS R01 HL114901NIH HHS S10 OD020069
6 · The paper itself

Abstract

While the incidence of esophageal adenocarcinoma (EAC) has risen drastically in Western countries over the last 40 years, a similar trend has not been observed for EAC in China. Here, we analyzed mutational spectrum, copy number alterations, and structural variants from whole-genome sequencing of 10 Chinese EAC tumor samples and their matched normal samples, and compared them to previously reported EAC tumor specimens from Western countries. The mutational burden in Chinese EAC was significantly lower than that found in EAC from Western countries. The hallmark A>C mutational signature observed at high frequency in EAC from Western countries, which has been linked to acid reflux, is completely absent in Chinese samples. Furthermore, none of the Chinese samples showed evidence of chromothripsis and genome doubling that are often found in EAC from Western countries. In summary, Chinese EAC tumor samples had distinct genomic profiles and signatures, suggesting that EAC in Chinese individuals may arise from a different etiological pathway.

Identifiers

PMID30374464
PMCPMC6200836
OpenAlexW2896704058

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.