Evidence map›Paper›PMID 30374120›Full record

ArticleScientific reports2018

Evaluating the origin and virulence of a Helicobacter pylori cagA-positive strain isolated from a non-human primate.

Kana Hashi, Chihiro Imai, Koji Yahara, Kamrunnesa Tahmina, Takeru Hayashi, Takeshi Azuma, Takako Miyabe-Nishiwaki, Hideyuki Sato, Masao Matsuoka, Sachi Niimi and 2 more

Open access · goldAbstract readComparative Study
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 16 citations in OpenAlex.

  1. Review
  2. Developing a potent vaccine againstExpert reviews in molecular medicine · 2024
    Review
  3. Review
  4. Analysis of Genetic Relatedness between Gastric and OralInternational journal of molecular sciences · 2023
    Article
  5. Review
  6. Animal Models andJournal of clinical medicine · 2022
    Review
  7. Review
  8. Review
  9. Detection ofPathogens (Basel, Switzerland) · 2020
    Article
  10. Article
  11. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

Kana HashiDivision of Microbiology, Graduate School of Medicine, The University of Tokyo, Tokyo, 113-0033, Japan.
Chihiro ImaiDivision of Microbiology, Graduate School of Medicine, The University of Tokyo, Tokyo, 113-0033, Japan.
Koji YaharaAntimicrobial Resistance Research Center, National Institute of Infectious Diseases, Higashimurayama, Tokyo, 189-0002, Japan.ORCID http://orcid.org/0000-0003-4289-1115
Kamrunnesa TahminaDivision of Microbiology, Graduate School of Medicine, The University of Tokyo, Tokyo, 113-0033, Japan.
Takeru HayashiDivision of Microbiology, Graduate School of Medicine, The University of Tokyo, Tokyo, 113-0033, Japan.
Takeshi AzumaDepartment of Gastroenterology, Kobe University Graduate School of Medicine, Kobe, 650-0017, Japan.
Takako Miyabe-NishiwakiPrimate Research Institute, Kyoto University, Aichi, 484-8506, Japan.
Hideyuki SatoDivision of Stem Cell Therapy, Center for Stem Cell Biology and Regenerative Medicine, Institute of Medical Science, The University of Tokyo, Tokyo, 108-8639, Japan.
Masao MatsuokaInstitute for Frontier Life and Medical Sciences, Kyoto University, Kyoto, 606-8507, Japan.
Sachi NiimiPrimate Research Institute, Kyoto University, Aichi, 484-8506, Japan.
Munehiro OkamotoPrimate Research Institute, Kyoto University, Aichi, 484-8506, Japan.
Masanori HatakeyamaDivision of Microbiology, Graduate School of Medicine, The University of Tokyo, Tokyo, 113-0033, Japan. mhata@m.u-tokyo.ac.jp.
The University of Tokyo · JPKyoto University · JPKobe University · JPNational Institute of Infectious Diseases · JP

Funding

Japan Agency for Medical Research and Development (AMED) 160200000291Japan Society for the Promotion of Science (JSPS) 15J05771Ministry of Education, Culture, Sports, Science, and Technology (MEXT) 16H06373Ministry of Education, Culture, Sports, Science, and Technology (MEXT) 16K15273
6 · The paper itself

Abstract

Helicobacter pylori cagA-positive strains are critically involved in the development of gastric cancer. Upon delivery into gastric epithelial cells via type IV secretion, the cagA-encoded CagA interacts with and thereby perturbs the pro-oncogenic phosphatase SHP2 and the polarity-regulating kinase PAR1b via the tyrosine-phosphorylated EPIYA-C/D segment and the CM sequence, respectively. Importantly, sequences spanning these binding regions exhibit variations among CagA proteins, which influence the pathobiological/oncogenic potential of individual CagA. Here we isolated an H. pylori strain (Hp_TH2099) naturally infecting the stomach of a housed macaque, indicating a zoonotic feature of H. pylori infection. Whole genome sequence analysis revealed that Hp_TH2099 belongs to the hpAsia2 cluster and possesses ABC-type Western CagA, which contains hitherto unreported variations in both EPIYA-C and CM sequences. The CM variations almost totally abolished PAR1b binding. Whereas pTyr + 5 variation in the EPIYA-C segment potentiated SHP2-binding affinity, pTyr-2 variation dampened CagA tyrosine phosphorylation and thus impeded CagA-SHP2 complex formation. As opposed to the H. pylori standard strain, infection of mouse ES cell-derived gastric organoids with Hp_TH2099 failed to elicit CagA-dependent epithelial destruction. Thus, the macaque-isolated H. pylori showed low virulence due to attenuated CagA activity through multiple substitutions in the sequences involved in binding with SHP2 and PAR1b.

Indexed as

Amino Acid SequenceAnimalsAntigens, BacterialBacterial ProteinsBinding SitesCell Cycle ProteinsGastric JuiceGenes, BacterialHelicobacter InfectionsHelicobacter pyloriHumansMacacaMiceModels, MolecularOrganoidsPhenotypeAntigens, BacterialBacterial ProteinscagA protein, Helicobacter pyloriCell Cycle ProteinsMark2 protein, mouseProtein Serine-Threonine KinasesProtein Tyrosine Phosphatase, Non-Receptor Type 11Ptpn11 protein, mouseRecombinant Proteins

Identifiers

PMID30374120
PMCPMC6206097
OpenAlexW2897224384

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.