Evidence map›Paper›PMID 30374083›Full record

ArticleNature structural & molecular biology2018

DNA damage-induced cell death relies on SLFN11-dependent cleavage of distinct type II tRNAs.

Manqing Li, Elaine Kao, Dane Malone, Xia Gao, Jean Y J Wang, Michael David

Open access · greenAbstract read
In one paragraph

Article in Nature structural & molecular biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 101 papers.

0numbers the graph read from it
0cells of the map it votes in
101citing papers in PubMed
4.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

101 citing papers in PubMed, 134 citations in OpenAlex.

  1. Trial
  2. Review
  3. Article
  4. Review
  5. Article
  6. tRNA modifications in viral replication.The Journal of biological chemistry · 2026
    Review
  7. Article
  8. Article
  9. The regulation, function and disease relevance of cytoplasmic tRNAs.Nature reviews. Molecular cell biology · 2026
    Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

41 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Manqing LiSection of Molecular Biology, Division of Biological Sciences, University of California, San Diego, La Jolla, CA, USA. m5li@ucsd.edu.ORCID http://orcid.org/0000-0002-7593-7979
Elaine KaoSection of Molecular Biology, Division of Biological Sciences, University of California, San Diego, La Jolla, CA, USA.
Dane MaloneSection of Molecular Biology, Division of Biological Sciences, University of California, San Diego, La Jolla, CA, USA.
Xia GaoSection of Molecular Biology, Division of Biological Sciences, University of California, San Diego, La Jolla, CA, USA.
Jean Y J WangSection of Molecular Biology, Division of Biological Sciences, University of California, San Diego, La Jolla, CA, USA.ORCID http://orcid.org/0000-0002-8217-0868
Michael DavidSection of Molecular Biology, Division of Biological Sciences, University of California, San Diego, La Jolla, CA, USA. midavid@ucsd.edu.ORCID http://orcid.org/0000-0001-6510-9961
University of California San Diego · US

Funding

Translational inhibition by Schlafen proteins during the DNA damage responseR01GM128155 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI DAVID, MICHAEL · 2019 to 2022
$1.3M
Antiviral host defense through selective translational inhibitionR01GM101982 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI DAVID, MICHAEL · 2012 to 2015
$1.2M
DNA structure modification by the Schlafen protein familyR21AI124199 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI DAVID, MICHAEL · 2016 to 2017
$402k
Slfn proteins in innate immunityR21AI088490 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI DAVID, MICHAEL · 2010 to 2011
$384k
NIAID NIH HHS R21 AI088490NIAID NIH HHS R21 AI124199NIGMS NIH HHS R01 GM101982NIGMS NIH HHS R01 GM128155
6 · The paper itself

Abstract

Transcriptome analysis reveals a strong positive correlation between human Schlafen family member 11 (SLFN11) expression and the sensitivity of tumor cells to DNA-damaging agents (DDAs). Here, we show that SLFN11 preferentially inhibits translation of the serine/threonine kinases ATR and ATM upon DDA treatment based on distinct codon usage without disrupting early DNA damage response signaling. Type II transfer RNAs (tRNAs), which include all serine and leucine tRNAs, are cleaved in a SLFN11-dependent manner in response to DDAs. Messenger RNAs encoded by genes with high TTA (Leu) codon usage, such as ATR, display utmost susceptibility to translational suppression by SLFN11. Specific attenuation of tRNA-Leu-TAA sufficed to ablate ATR protein expression and restore the DDA sensitivity of SLFN11-deficient cells. Our study uncovered a novel mechanism of codon-specific translational inhibition via SLFN11-dependent tRNA cleavage in the DNA damage response and supports the notion that SLFN11-deficient tumor cells can be resensitized to DDAs by targeting ATR or tRNA-Leu-TAA.

Indexed as

DNA DamageAtaxia Telangiectasia Mutated ProteinsCamptothecinCell DeathCell Line, TumorCodonHEK293 CellsHumansNuclear ProteinsProtein BiosynthesisRNA, Small InterferingRNA, TransferRNA, Transfer, LeuTopoisomerase I InhibitorsAtaxia Telangiectasia Mutated ProteinsATM protein, humanATR protein, humanCamptothecinCodonNuclear ProteinsRNA, Small InterferingRNA, TransferRNA, Transfer, LeuSLFN11 protein, humanTopoisomerase I Inhibitors

Identifiers

PMID30374083
PMCPMC6579113
OpenAlexW2895818115

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.