Evidence map›Paper›PMID 30374036›Full record

ArticleScientific reports2018

An atypical RNA silencing suppression strategy provides a snapshot of the evolution of sweet potato-infecting potyviruses.

Bernardo Rodamilans, Adrián Valli, Ares Mingot, David San León, Juan José López-Moya, Juan Antonio García

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
4.4field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Insight into aphid mediatedFrontiers in microbiology · 2022
    Review
  7. Article
  8. P1 ofJournal of virology · 2021
    Article
  9. Article
  10. Article
  11. A Newly Identified Virus in the FamilyJournal of virology · 2020
    Article
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Bernardo RodamilansCentro Nacional de Biotecnología CNB, CSIC, Madrid, Spain. brodamilans@cnb.csic.es.ORCID http://orcid.org/0000-0002-6541-2589
Adrián ValliCentro Nacional de Biotecnología CNB, CSIC, Madrid, Spain.
Ares MingotCenter for Research in Agricultural Genomics CRAG, CSIC-IRTA-UAB-UB, Campus UAB Bellaterra, Cerdanyola del Vallès, Barcelona, Spain.
David San LeónCentro Nacional de Biotecnología CNB, CSIC, Madrid, Spain.
Juan José López-MoyaCenter for Research in Agricultural Genomics CRAG, CSIC-IRTA-UAB-UB, Campus UAB Bellaterra, Cerdanyola del Vallès, Barcelona, Spain.
Juan Antonio GarcíaCentro Nacional de Biotecnología CNB, CSIC, Madrid, Spain.
Centro Nacional de Biotecnología · ESCenter for Research in Agricultural Genomics · ES

Funding

Ministerio de Economía y Competitividad (Ministry of Economy and Competitiveness) BIO2015-73900-JINMinisterio de Economía y Competitividad (Ministry of Economy and Competitiveness) BIO2016-80572-R
6 · The paper itself

Abstract

Plant viruses usually encode proteins with RNA silencing suppression (RSS) activity to counteract plant defenses. In Potyvirus, the largest genus in the family Potyviridae, this role is taken over by the multifunctional HCPro, also involved in aphid transmission, polyprotein processing and virion formation. Recently, the large P1 of Sweet potato feathery mottle virus (SPFMV) was characterized finding an extra ORF produced after polymerase slippage, which originates the product P1N-PISPO. Transient expression assays showed that SPFMV P1 and P1N-PISPO presented RSS activity, while HCPro did not. In this work, we analyze possible differences between HCPro of SPFMV and other potyviruses, testing HCPro RSS activity in a transient expression assay, and using a Plum pox virus-based system to test the ability of SPFMV P1N-PISPO and HCPro to serve as RNA silencing suppressors in the context of a viral infection. Our results indicate that not only P1 and P1N-PISPO, but also HCPro display RSS activity when expressed in a suitable context, stressing the importance of the selected experimental system for testing anti-silencing capacity of proteins. The presence of multiple viral silencing suppressors in SPFMV adds complexity to an already intricate RSS system, and provides insight into the hypothetical evolution of sweet potato-infecting potyvirids.

Indexed as

Evolution, MolecularRNA InterferenceAmino Acid SequenceIpomoea batatasOpen Reading FramesPlant DiseasesPotyvirusSequence AlignmentViral ProteinsViral Proteins

Identifiers

PMID30374036
PMCPMC6206096
OpenAlexW2897138677

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.