Evidence map›Paper›PMID 30373531›Full record

ArticleBMC genomics2018

Profiling the miRNA-mRNA-lncRNA interaction network in MSC osteoblast differentiation induced by (+)-cholesten-3-one.

Qiuke Hou, Yongquan Huang, Yamei Liu, Yiwen Luo, Bin Wang, Rudong Deng, Saixia Zhang, Fengbin Liu, Dongfeng Chen

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.0field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 23 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Qiuke HouDepartment of Anatomy, The Research Centre of Integrative Medicine, Guangzhou University of Chinese Medicine, Guangzhou, 510000, Guangdong, People's Republic of China.
Yongquan HuangDepartment of Orthopaedics, The Second Affiliated Hospital of Guangzhou University of Chinese Medicine, Guangzhou, 510000, Guangdong, People's Republic of China.
Yamei LiuDepartment of Diagnosis of Traditional Chinese Medicine, Guangzhou University of Chinese Medicine, Guangzhou, 510000, Guangdong, People's Republic of China.
Yiwen LuoDepartment of Trauma, The Third Affiliated Hospital of Guangzhou University of Chinese Medicine, Guangzhou, 510000, Guangdong, People's Republic of China.
Bin WangDepartment of Trauma, The Third Affiliated Hospital of Guangzhou University of Chinese Medicine, Guangzhou, 510000, Guangdong, People's Republic of China.
Rudong DengDepartment of Anatomy, The Research Centre of Integrative Medicine, Guangzhou University of Chinese Medicine, Guangzhou, 510000, Guangdong, People's Republic of China.
Saixia ZhangDepartment of Anatomy, The Research Centre of Integrative Medicine, Guangzhou University of Chinese Medicine, Guangzhou, 510000, Guangdong, People's Republic of China.
Fengbin LiuThe First Affiliated Hospital of Guangzhou University of Chinese Medicine, Guangzhou, 510000, Guangdong, People's Republic of China.
Dongfeng ChenDepartment of Anatomy, The Research Centre of Integrative Medicine, Guangzhou University of Chinese Medicine, Guangzhou, 510000, Guangdong, People's Republic of China. cdf27212@21cn.com.
Guangzhou University of Chinese Medicine · CNFirst Affiliated Hospital of Guangzhou University of Chinese Medicine · CN

Funding

China Postdoctoral Science Foundation 2017M612641Guangdong Provincial Traditional Chinese Medicine Research Project 20181095Guangdong Provincial Traditional Chinese Medicine Research Project 20182043Natural Science Foundation of Guangdong Province 2017A030312009
6 · The paper itself

Abstract

backgroundOur previous study showed that (+)-cholesten-3-one (CN) has the potential to induce the osteoblastic differentiation of mesenchymal stem cells (MSCs). However, the roles of CN in targeting miRNA-mRNA-lncRNA interactions to regulate osteoblast differentiation remain poorly understood.

resultsA total of 77 miRNAs (36 upregulated and 41 downregulated) and 295 lncRNAs (281 upregulated and 14 downregulated) were significantly differentially expressed during CN-induced MSC osteogenic differentiation. Bioinformatic analysis identified that several pathways may play vital roles in MSC osteogenic differentiation, such as the vitamin D receptor signalling, TNF signalling, PI3K-Akt signalling, calcium signalling, and mineral absorption pathways. Further bioinformatic analysis revealed 16 core genes, including 6 mRNAs (Vdr, Mgp, Fabp3, Fst, Cd38, and Col1a1), 5 miRNAs (miR-483, miR-298, miR-361, miR-92b and miR-155) and 5 lncRNAs (NR_046246.1, NR_046239.1, XR_086062.1, XR_145872.1 and XR_146737.1), that may play important roles in regulating the CN-induced osteogenic differentiation of MSCs. Verified by the luciferase reporter, AR-S, qRT-PCR and western blot assays, we identified one miRNA (miR-298) that may enhance the osteogenic differentiation potential of MSCs via the vitamin D receptor signalling pathway.

conclusionsThis study revealed the global expression profile of miRNAs and lncRNAs involved in the Chinese medicine active ingredient CN-induced osteoblast differentiation of MSCs for the first time and provided a foundation for future investigations of miRNA-mRNA-lncRNA interaction networks to completely illuminate the regulatory role of CN in MSC osteoblast differentiation.

Indexed as

Gene Expression Regulation, DevelopmentalGene Regulatory NetworksAnimalsCell DifferentiationCholestenesComputational BiologyGene Expression ProfilingMesenchymal Stem CellsMicroRNAsOsteoblastsOsteogenesisRatsRNA InterferenceRNA, Long NoncodingRNA, MessengerTranscriptomeCholestenesMicroRNAsRNA, Long NoncodingRNA, Messenger(+)-cholesten-3-oneMesenchymal stem cellsmiRNA-mRNA-lncRNAOsteoblastic differentiation

Identifiers

PMID30373531
PMCPMC6206902
OpenAlexW2899279394

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.