Evidence map›Paper›PMID 30373512›Full record

ArticleBMC plant biology2018

Autophagy counteracts instantaneous cell death during seasonal senescence of the fine roots and leaves in Populus trichocarpa.

Natalia Wojciechowska, Katarzyna Marzec-Schmidt, Ewa M Kalemba, Aleksandra Zarzyńska-Nowak, Andrzej M Jagodziński, Agnieszka Bagniewska-Zadworna

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed, 1 pooled it
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 1 synthesis or guideline pooled it, 33 citations in OpenAlex.

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  12. Autophagy in the Lifetime of Plants: From Seed to Seed.International journal of molecular sciences · 2022
    Review
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  19. Glucose signaling, AtRGS1 and plant autophagy.Plant signaling & behavior · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 1 country.

Natalia WojciechowskaDepartment of General Botany, Institute of Experimental Biology, Faculty of Biology, Adam Mickiewicz University, Umultowska 89, 61-614, Poznań, Poland. natalia.wojciechowska@amu.edu.pl.
Katarzyna Marzec-SchmidtDepartment of General Botany, Institute of Experimental Biology, Faculty of Biology, Adam Mickiewicz University, Umultowska 89, 61-614, Poznań, Poland.
Ewa M KalembaInstitute of Dendrology, Polish Academy of Sciences, Parkowa 5, 62-035, Kórnik, Poland.
Aleksandra Zarzyńska-NowakDepartment of Virusology and Bacteriology, Institute of Plant Protection, Węgorka 20, 60-318, Poznań, Poland.
Andrzej M JagodzińskiInstitute of Dendrology, Polish Academy of Sciences, Parkowa 5, 62-035, Kórnik, Poland.
Agnieszka Bagniewska-ZadwornaDepartment of General Botany, Institute of Experimental Biology, Faculty of Biology, Adam Mickiewicz University, Umultowska 89, 61-614, Poznań, Poland. agabag@amu.edu.pl.
Adam Mickiewicz University in Poznań · PLInstitute of Dendrology · PLInstitute of Plant Protection · PLPolish Academy of Sciences · PL

Funding

National Science Center, Poland 2012/07/E/NZ9/00194National Science Center, Poland 2016/23/N/NZ3/00073
6 · The paper itself

Abstract

backgroundSenescence, despite its destructive character, is a process that is precisely-regulated. The control of senescence is required to achieve remobilization of resources, a principle aspect of senescence. Remobilization allows plants to recapture valuable resources that would otherwise be lost to the environment with the senescing organ. Autophagy is one of the critical processes that is switched on during senescence. This evolutionarily conserved process plays dual, antagonistic roles. On the one hand, it counteracts instantaneous cell death and allows the process of remobilization to be set in motion, while on the other hand, it participates in the degradation of cellular components. Autophagy has been demonstrated to occur in many plant species during the senescence of leaves and flower petals. Little is known, however, about the senescence process in other ephemeral organs, such as fine roots, whose lifespan is also relatively short. We hypothesized that, like the case of seasonal leaf senescence, autophagy also plays a role in the senescence of fine roots, and that both processes are synchronized in their timing.

resultsWe evaluated which morphological and cytological symptoms are universal or unique in the senescence of fine roots and leaves. The results of our study confirmed that autophagy plays a key role in the senescence of fine roots, and is associated also with the process of cellular components degradation. In both organs, structures related to autophagy were observed, such as autophagic bodies and autophagosomes. The role of autophagy in the senescence of these plant organs was further confirmed by an analysis of ATG gene expression and protein detection.

conclusionsThe present study is the first one to examine molecular mechanisms associated with the senescence of fine roots, and provide evidence that can be used to determine whether senescence of fine roots can be treated as another example of developmentally programmed cell death (dPCD). Our results indicate that there is a strong similarity between the senescence of fine roots and other ephemeral organs, suggesting that this process occurs by the same autophagy-related mechanisms in all plant ephemeral organs.

Indexed as

AutophagyCell SurvivalGene Expression Regulation, PlantPlant CellsPlant LeavesPlant ProteinsPlant RootsPopulusSeasonsPlant ProteinsATG8 proteinATG genesAutophagyFine rootsLeavesSenescence

Identifiers

PMID30373512
PMCPMC6206944
OpenAlexW2899022911

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.