Evidence map›Paper›PMID 30372610›Full record

ArticleACS chemical biology2018

A Local Allosteric Network in Heat Shock Protein 70 (Hsp70) Links Inhibitor Binding to Enzyme Activity and Distal Protein-Protein Interactions.

Silvia Rinaldi, Victoria A Assimon, Zapporah T Young, Giulia Morra, Hao Shao, Isabelle R Taylor, Jason E Gestwicki, Giorgio Colombo

Abstract read
In one paragraph

Article in ACS chemical biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.0field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. New inhibitors of themSphere · 2026
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  16. Neutral analogs of the heat shock protein 70 (Hsp70) inhibitor, JG-98.Bioorganic & medicinal chemistry letters · 2020
    Article
  17. Article
  18. Review
  19. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Silvia RinaldiIstituto di Chimica del Riconoscimento Molecolare , CNR Via Mario Bianco, 9 20131 Milano , Italy.ORCID 0000-0002-1088-7253
Victoria A AssimonDepartment of Pharmaceutical Chemistry , University of California at San Francisco , San Francisco , California 94158 , United States.
Zapporah T YoungDepartment of Pharmaceutical Chemistry , University of California at San Francisco , San Francisco , California 94158 , United States.
Giulia MorraIstituto di Chimica del Riconoscimento Molecolare , CNR Via Mario Bianco, 9 20131 Milano , Italy.
Hao ShaoDepartment of Pharmaceutical Chemistry , University of California at San Francisco , San Francisco , California 94158 , United States.
Isabelle R TaylorDepartment of Pharmaceutical Chemistry , University of California at San Francisco , San Francisco , California 94158 , United States.
Jason E GestwickiDepartment of Pharmaceutical Chemistry , University of California at San Francisco , San Francisco , California 94158 , United States.ORCID 0000-0002-6125-3154
Giorgio ColomboIstituto di Chimica del Riconoscimento Molecolare , CNR Via Mario Bianco, 9 20131 Milano , Italy.
University of California, San Francisco · USInstitute of Chemistry of Molecular Recognition · ITUniversity of Pavia · IT

Funding

Molecular Chaperones and Small MoleculesR01NS059690 · NINDS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Jason E Gestwicki · 2008 to 2026
$7.9M
NINDS NIH HHS R01 NS059690
6 · The paper itself

Abstract

Allosteric inhibitors can be more difficult to optimize without an understanding of how their binding influences the conformational motions of the target. Here, we used an integrated computational and experimental approach to probe the molecular mechanism of an allosteric inhibitor of heat shock protein 70 (Hsp70). The anticancer compound, MKT-077, is known to bind a conserved site in members of the Hsp70 family, which favors the ADP-bound state and interferes with a protein-protein interaction (PPI) at long range. However, the binding site does not overlap with either the nucleotide-binding cleft or the PPI contact surface, so its mechanism is unclear. To this end, we modeled Hsp70's internal dynamics and studied how MKT-077 alters local sampling of its allosteric states. The results pointed to a set of concerted motions between five loops in Hsp70's nucleotide-binding domain (NBD), surrounding the MKT-077 binding site. To test this prediction, we mutated key residues and monitored chaperone activities in vitro. Together, the results indicate that MKT-077 interacts with loop222 to favor a pseudo-ADP bound conformer of Hsp70's NBD, even when ATP is present. We used this knowledge to synthesize an analog of MKT-077 that would better prevent motions of loop222 and confirmed that it had improved antiproliferative activity in breast cancer cells. These results provide an example of how to unlock and leverage the complex mechanisms of allosteric inhibitors.

Indexed as

Adenosine DiphosphateAdenosine TriphosphateAllosteric RegulationAntineoplastic AgentsBinding SitesHSC70 Heat-Shock ProteinsHumansMolecular Dynamics SimulationProtein BindingProtein ConformationProtein DomainsPyridinesThiazolesAdenosine DiphosphateAdenosine TriphosphateAntineoplastic AgentsHSC70 Heat-Shock ProteinsHSPA8 protein, humanMKT 077PyridinesThiazoles

Identifiers

PMID30372610
PMCPMC6377810
OpenAlexW2898679107

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.