ArticleThe ISME journal2019
Legacy of land use history determines reprogramming of plant physiology by soil microbiome.
Article in The ISME journal, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 98 papers.
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Who cites it
98 citing papers in PubMed, 302 citations in OpenAlex.
- Predicting the plastic biodegradation potential within microbial lineages and across global ecosystems.Microbial genomics · 2026Article
- Legacy Effects ofJournal of fungi (Basel, Switzerland) · 2026Article
- Distinct effects of AM fungi and root pathogens drive differential plant-microbial interactions in steppe graminoids and forbs.BMC ecology and evolution · 2026Article
- Agricultural intensification, microbial homogenization and loss of rare microbiota.Nature reviews. Microbiology · 2026Review
- A synthetic microbial community for soybean biofertilization designed via chlorophyll-based iterative selection.Applied and environmental microbiology · 2026Article
- Volume Matters: Dilution of Soil Inoculum Reduces Positive Plant-Soil Feedback inPlants (Basel, Switzerland) · 2026Article
- Synthetic Biology of Plants and Microbes for Agriculture, Environment, and Future Applications.Chemical reviews · 2026Review
- Fungal Endophyte Comprehensively Orchestrates Nodulation and Nitrogen Utilization of Legume Crop (Journal of fungi (Basel, Switzerland) · 2026Article
- Evolutionary mechanisms underlying bacterial adaptation to the plant environment.FEMS microbiology reviews · 2026Review
- Short-term calcium peroxide application promotes soil microbial interactions to improve peanut yield in acidic soils.Frontiers in microbiology · 2026Article
- Perennial grassland led to more complex bacterial communities as well as inter-domain networks across three continuous monoculture systems.Frontiers in microbiology · 2026Article
- Transcriptome-guided discovery of novel plant-associated genes in a rhizosphere Pseudomonas.Microbiome · 2025Article
- Metagenomics and its impact on environmental and therapeutic microbiology.Archives of microbiology · 2025Review
- Beyond genotype: the influence of developmental stage on rice rhizospheric microbiome-metabolome networks.BMC plant biology · 2025Article
- Characterization of transcriptional and metabolic responses to a complex plant growth-promoting soil inoculum.Plant biology (Stuttgart, Germany) · 2025Article
- Article
- Exploring the role of Peanut (Arachis hypogaea L.) root architecture in enhancing adaptation to climate change for sustainable agriculture and resilient crop production: A review.Journal, genetic engineering & biotechnology · 2025Review
- Self-alleviation of continuous-cropping obstacles in potato via root-exudate-driven recruitment of growth-promoting bacteria.Plant communications · 2025Article
- Soil organic matter composition affects ecosystem multifunctionality by mediating the composition of microbial communities in long-term restored meadows.Environmental microbiome · 2025Article
- Long-term impact of different prevalent cropping systems on soil physico-chemical characteristics under subtropical climate conditions of Punjab, Pakistan.Scientific reports · 2025Article
38 more citing papers are in PubMed but not listed here.
Corrections and comments
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Authors and funding
7 authors at 3 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Microorganisms associated with roots are thought to be part of the so-called extended plant phenotypes with roles in the acquisition of nutrients, production of growth hormones, and defense against diseases. Since the crops selectively enrich most rhizosphere microbes out of the bulk soil, we hypothesized that changes in the composition of bulk soil communities caused by agricultural management affect the extended plant phenotype. In the current study, we performed shotgun metagenome sequencing of the rhizosphere microbiome of the peanut (Arachis hypogaea) and metatranscriptome analysis of the roots of peanut plants grown in the soil with different management histories, peanut monocropping and crop rotation. We found that the past planting record had a significant effect on the assembly of the microbial community in the peanut rhizosphere, indicating a soil memory effect. Monocropping resulted in a reduction of the rhizosphere microbial diversity, an enrichment of several rare species, and a reduced representation of traits related to plant performance, such as nutrients metabolism and phytohormone biosynthesis. Furthermore, peanut plants in monocropped soil exhibited a significant reduction in growth coinciding with a down-regulation of genes related to hormone production, mainly auxin and cytokinin, and up-regulation of genes related to the abscisic acid, salicylic acid, jasmonic acid, and ethylene pathways. These findings suggest that land use history affects crop rhizosphere microbiomes and plant physiology.
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