Evidence map›Paper›PMID 30367910›Full record

ArticleThe Journal of allergy and clinical immunology2019

Integrative approach identifies corticosteroid response variant in diverse populations with asthma.

Albert M Levin, Hongsheng Gui, Natalia Hernandez-Pacheco, Mao Yang, Shujie Xiao, James J Yang, Samantha Hochstadt, Andrea J Barczak, Walter L Eckalbar, Dean Rynkowski and 7 more

Registry-linked trialOpen access · bronzeAbstract read
In one paragraph

Article in The Journal of allergy and clinical immunology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT01142947 (Study of Asthma Phenotypes and Pharmacogenomic Interactions by Race-Ethnicity), which is not on this map. Cited by 22 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed, 1 pooled it
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT01142947 nacompletednot on this map

Study of Asthma Phenotypes and Pharmacogenomic Interactions by Race-Ethnicity (SAPPHIRE)

TypeinterventionalSponsorHenry Ford Health SystemRan2007 to 2019Enrolled362ConditionsAsthmaArmsbeclomethasone dipropionate
3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 1 synthesis or guideline pooled it, 32 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Review
  4. Genes · 2024
    Article
  5. Review
  6. Article
  7. Asthma Exacerbations: The Genes Behind the Scenes.Journal of investigational allergology & clinical immunology · 2023
    Review
  8. Review
  9. Review
  10. Journal of asthma and allergy · 2022
    Article
  11. Identification ofJournal of personalized medicine · 2021
    Article
  12. Article
  13. Mapping the 17q12-21.1 Locus for Variants Associated with Early-Onset Asthma in African Americans.American journal of respiratory and critical care medicine · 2021
    Article
  14. Precision Medicine in Childhood Asthma: Omic Studies of Treatment Response.International journal of molecular sciences · 2020
    Review
  15. Article
  16. Article
  17. Pharmacogenetics of Pediatric Asthma: Current Perspectives.Pharmacogenomics and personalized medicine · 2020
    Review
  18. Review
  19. Advances in asthma and allergic disease genetics: Is bigger always better?The Journal of allergy and clinical immunology · 2019
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 5 institutions in 2 countries.

Albert M LevinDepartment of Public Health Sciences, Henry Ford Health System, Detroit, Mich.
Hongsheng GuiCenter for Individualized and Genomic Medicine Research (CIGMA), Henry Ford Health System, Detroit, Mich.
Natalia Hernandez-PachecoResearch Unit, Hospital Universitario N.S. de Candelaria, Universidad de La Laguna, Santa Cruz de Tenerife, Spain.
Mao YangCenter for Individualized and Genomic Medicine Research (CIGMA), Henry Ford Health System, Detroit, Mich.
Shujie XiaoCenter for Individualized and Genomic Medicine Research (CIGMA), Henry Ford Health System, Detroit, Mich.
James J YangSchool of Nursing, University of Michigan, Ann Arbor, Mich.
Samantha HochstadtCenter for Individualized and Genomic Medicine Research (CIGMA), Henry Ford Health System, Detroit, Mich.
Andrea J BarczakLung Biology Center and Functional Genomics Core, University of California San Francisco, San Francisco, Calif.
Walter L EckalbarLung Biology Center and Functional Genomics Core, University of California San Francisco, San Francisco, Calif.
Dean RynkowskiCenter for Individualized and Genomic Medicine Research (CIGMA), Henry Ford Health System, Detroit, Mich.
Lesly-Anne SamedyDepartment of Bioengineering & Therapeutic Sciences, University of California San Francisco, San Francisco, Calif; Department of Medicine, University of California San Francisco, San Francisco, Calif.
Pui-Yan KwokCardiovascular Research Institute, University of California San Francisco, San Francisco, Calif; Department of Dermatology, University of California San Francisco, San Francisco, Calif.
Maria Pino-YanesResearch Unit, Hospital Universitario N.S. de Candelaria, Universidad de La Laguna, Santa Cruz de Tenerife, Spain; CIBER de Enfermedades Respiratorias, Instituto de Salud Carlos III, Madrid, Spain; Genomics and Health Group, Department of Biochemistry, Microbiology, Cell Biology and Genetics, Universidad de La Laguna, La Laguna, Tenerife, Spain.
David J ErleLung Biology Center and Functional Genomics Core, University of California San Francisco, San Francisco, Calif; Department of Medicine, University of California San Francisco, San Francisco, Calif.
David E LanfearCenter for Individualized and Genomic Medicine Research (CIGMA), Henry Ford Health System, Detroit, Mich; Department of Internal Medicine, Henry Ford Health System, Detroit, Mich.
Esteban G BurchardDepartment of Bioengineering & Therapeutic Sciences, University of California San Francisco, San Francisco, Calif; Department of Medicine, University of California San Francisco, San Francisco, Calif.
L Keoki WilliamsCenter for Individualized and Genomic Medicine Research (CIGMA), Henry Ford Health System, Detroit, Mich; Department of Internal Medicine, Henry Ford Health System, Detroit, Mich. Electronic address: kwillia5@hfhs.org.
Henry Ford Health System · USUniversity of California, San Francisco · USInstituto de Salud Carlos III · ESUniversidad de La Laguna · ESUniversity of Michigan–Ann Arbor · US

Funding

Understanding Asthma EndotypesU19AI077439 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI David J Erle · 2008 to 2026
$41.1M
The Airway Functional Genomics of Bronchodilator Drug Response in Minority Children with AsthmaR01HL117004 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI AHITUV, NADAV, SEIBOLD, MAX A · 2013 to 2022
$9.3M
CLINICAL, PHARMACOLOGY, DRUG ACTION &PHARMACOKINETICST32GM007546 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Radojka Savic · 1985 to 2026
$8.9M
Social Interventions to address disparities In young adult tobacco useP60MD006902 · NIMHD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI LING, PAMELA MAY · 2012 to 2016
$6.4M
Gene-environments and Admixture in Latino Asthmatics (GALA 2)R01ES015794 · NIEHS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BURCHARD, ESTEBAN GONZALEZ · 2008 to 2012
$5.4M
PHARMACOGENOMICS OF INHALED CORTICOSTEROID RESPONSIVENESS IN PATIENTS WITH ASTHMAR01AI079139 · NIAID · HENRY FORD HEALTH SYSTEM · PI WILLIAMS, KEOKI · 2009 to 2013
$3.9M
Genes, air pollution, and asthma severity in minority childrenR01MD010443 · NIMHD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SEIBOLD, MAX A, ZIV, ELAD · 2016 to 2020
$3.8M
Leveraging electronic medical records to perform large-scale diabetes pharmacogenomics among ancestrally diverse patient populationsR01DK113003 · NIDDK · HENRY FORD HEALTH SYSTEM · PI WILLIAMS, KEOKI · 2017 to 2021
$3.2M
Poly-omic Study of Asthma Exacerbations in Diverse PopulationsR01HL141845 · NHLBI · HENRY FORD HEALTH SYSTEM · PI WILLIAMS, KEOKI · 2019 to 2022
$3.0M
Mechanism of Endotoxin's Effect On Allergy RiskR01AI061774 · NIAID · HENRY FORD HEALTH SYSTEM · PI WILLIAMS, KEOKI · 2004 to 2008
$2.9M
Combined Transcriptomics and Genomics to Find Asthma Genes in Admixed PopulationsR01HL118267 · NHLBI · HENRY FORD HEALTH SYSTEM · PI WILLIAMS, KEOKI · 2014 to 2017
$2.9M
VALIDATION OF ADHERENCE DATA--USE IN CLINICAL PRACTICER01DK064695 · NIDDK · HENRY FORD HEALTH SYSTEM · PI WILLIAMS, KEOKI · 2003 to 2010
$2.7M
NHLBI NIH HHS K99 HL135403NHLBI NIH HHS R00 HL135403NHLBI NIH HHS R01 HL079055NHLBI NIH HHS R01 HL117004NHLBI NIH HHS R01 HL118267NHLBI NIH HHS R01 HL141845NHLBI NIH HHS R01 HL141992NIAID NIH HHS R01 AI061774NIAID NIH HHS R01 AI079139NIAID NIH HHS U19 AI077439NIDDK NIH HHS R01 DK064695NIDDK NIH HHS R01 DK113003NIEHS NIH HHS R01 ES015794NIEHS NIH HHS R21 ES024844NIGMS NIH HHS T32 GM007546NIMHD NIH HHS P60 MD006902NIMHD NIH HHS R01 MD010443
6 · The paper itself

Abstract

backgroundAlthough inhaled corticosteroid (ICS) medication is considered the cornerstone treatment for patients with persistent asthma, few ICS pharmacogenomic studies have involved nonwhite populations.

objectiveWe sought to identify genetic predictors of ICS response in multiple population groups with asthma.

methodsThe discovery group comprised African American participants from the Study of Asthma Phenotypes and Pharmacogenomic Interactions by Race-Ethnicity (SAPPHIRE) who underwent 6 weeks of monitored ICS therapy (n = 244). A genome-wide scan was performed to identify single nucleotide polymorphism (SNP) variants jointly associated (ie, the combined effect of the SNP and SNP × ICS treatment interaction) with changes in asthma control. Top associations were validated by assessing the joint association with asthma exacerbations in 3 additional groups: African Americans (n = 803 and n = 563) and Latinos (n = 1461). RNA sequencing data from 408 asthmatic patients and 405 control subjects were used to examine whether genotype was associated with gene expression.

resultsOne variant, rs3827907, was significantly associated with ICS-mediated changes in asthma control in the discovery set (P = 7.79 × 10

conclusionWe identified a variant, rs3827907, that appears to influence response to ICS treatment in multiple population groups and likely mediates its effect through eosinophils.

Indexed as

Black or African AmericanGenotypeHispanic or LatinoAdolescentAdrenal Cortex HormonesAdultAsthmaChildCohort StudiesDisease ProgressionEosinophil-Derived NeurotoxinEosinophilsGenome-Wide Association StudyHumansLeukocyte CountMaleAdrenal Cortex HormonesEosinophil-Derived NeurotoxinRNASE2 protein, humanEDDM3Beosinophil-derived neurotoxineosinophilsPharmacogeneticsRNASE2transcriptome

Identifiers

PMID30367910
PMCPMC6482107
OpenAlexW2898113284

What OpenQuestion holds

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.