Evidence map›Paper›PMID 30367286›Full record

ArticleBotanical studies2018

Grain width 2 (GW2) and its interacting proteins regulate seed development in rice (Oryza sativa L.).

Kyu Ho Lee, Sang Woo Park, Yeon Jeong Kim, Yeon Jong Koo, Jong Tae Song, Hak Soo Seo

Open access · goldAbstract read
In one paragraph

Article in Botanical studies, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
4.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 31 citations in OpenAlex.

  1. Mapping and validation of QTkw.cau-3DL, a major QTL controlling thousand-kernel weight in wheat.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025
    Article
  2. Meta-QTL mapping for wheat thousand kernel weight.Frontiers in plant science · 2024
    Article
  3. Molecular Network for Regulation of Seed Size in Plants.International journal of molecular sciences · 2023
    Review
  4. Article
  5. A 24,482-bp deletion is associated with increased seed weight in Brassica napus L.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2021
    Article
  6. Article
  7. Review
  8. RING-Type E3 Ubiqitin Ligase Barley Genes (Plants (Basel, Switzerland) · 2020
    Article
  9. Article
  10. Breeding science · 2020
    Article
  11. A RING-Type E3 Ubiquitin Ligase,International journal of molecular sciences · 2020
    Article
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Kyu Ho LeeDepartment of Plant Science, College of Agriculture and Life Sciences, Research Institute of Agriculture and Life Sciences, Seoul National University, Gwanakro 200, Gwanak-gu, Seoul, 151-921, South Korea.
Sang Woo ParkDepartment of Plant Science, College of Agriculture and Life Sciences, Research Institute of Agriculture and Life Sciences, Seoul National University, Gwanakro 200, Gwanak-gu, Seoul, 151-921, South Korea.
Yeon Jeong KimDepartment of Plant Science, College of Agriculture and Life Sciences, Research Institute of Agriculture and Life Sciences, Seoul National University, Gwanakro 200, Gwanak-gu, Seoul, 151-921, South Korea.
Yeon Jong KooDepartment of Biological Chemistry, Chonnam National University, Gwangju, 61186, South Korea.
Jong Tae SongSchool of Applied Biosciences, Kyungpook National University, Daegu, 41566, South Korea.
Hak Soo SeoDepartment of Plant Science, College of Agriculture and Life Sciences, Research Institute of Agriculture and Life Sciences, Seoul National University, Gwanakro 200, Gwanak-gu, Seoul, 151-921, South Korea. seohs@snu.ac.kr.
Seoul National University · KRChonnam National University · KRKyungpook National University · KR

Funding

Next-Generation BioGreen 21 Program PJ01327601Next-Generation BioGreen 21 Program PJ01330802
6 · The paper itself

Abstract

backgroundSeed size has been extensively studied in crop plants, as it determines crop yield. However, the mechanism of seed development remains elusive. In this study, we explored the mechanism of seed development in rice (Oryza sativa L.), and identified proteins affecting seed size.

resultsProteomic analysis showed that glyceraldehyde 3-phosphate dehydrogenase, chitinase 14 (CHT14), and phosphoglycerate kinase (PGK) accumulated to high levels in the seeds of the natural japonica rice mutant Oochikara, which carries a loss-of-function mutation in the grain width 2 (GW2) gene; GW2 encodes a RING-type E3 ubiquitin ligase. In vitro pull-down and ubiquitination assays showed that CHT14 and PGK directly interacted with GW2 but were not ubiquitinated by GW2. Immunoblot analysis revealed that protein disulfide isomerase-like 1-1 accumulated to high levels in young developing seeds of the gw2 mutant compared with the wild type. Histochemical β-glucuronidase staining showed strong expression of GW2 in leaf and root tissues but weak expression in leaf sheaths and internodes. In addition, transformation of the green fluorescent protein (GFP) gene under the control of the GW2 promoter in rice revealed GFP expression in the aleurone layer of seeds.

conclusionsCollectively, these results suggest that GW2 regulates seed size through direct interactions with proteins involved in carbohydrate metabolism by modulating their activity or stability and controlling disulfide bond formation in various proteins during seed development. Additionally, GW2 participates in vegetative as well as reproductive growth, and protects the seed from pathogen attack.

Indexed as

Aleurone layerCHT14E3 ubiquitin ligaseGW2PDIL1-1PGKRiceSeed size

Identifiers

PMID30367286
PMCPMC6203701
OpenAlexW2898520168

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.