Evidence map›Paper›PMID 30367061›Full record

ArticleNature communications2018

Enhanced mRNA FISH with compact quantum dots.

Yang Liu, Phuong Le, Sung Jun Lim, Liang Ma, Suresh Sarkar, Zhiyuan Han, Stephen J Murphy, Farhad Kosari, George Vasmatzis, John C Cheville and 1 more

Abstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Structural Design of Multidentate Copolymers as Compact Quantum Dot Coatings for Live-Cell Single-Particle Imaging.Chemistry of materials : a publication of the American Chemical Society · 2022
    Article
  9. Antibody Self-Assembly Maximizes Cytoplasmic Immunostaining Accuracy of Compact Quantum Dots.Chemistry of materials : a publication of the American Chemical Society · 2021
    Article
  10. Engineering Brightness Matched Indium Phosphide Quantum Dots.Chemistry of materials : a publication of the American Chemical Society · 2021
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Brief update on endocytosis of nanomedicines.Advanced drug delivery reviews · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Yang LiuDepartment of Bioengineering, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA.
Phuong LeDepartment of Bioengineering, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA.
Sung Jun LimDepartment of Bioengineering, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA.
Liang MaMicro and Nanotechnology Laboratory, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA.ORCID http://orcid.org/0000-0002-6102-5821
Suresh SarkarDepartment of Bioengineering, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA.
Zhiyuan HanMicro and Nanotechnology Laboratory, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA.
Stephen J MurphyBiomarker Discovery Program, Center of Individualized Medicine, Mayo Clinic, Rochester, MN, 55905, USA.ORCID http://orcid.org/0000-0002-8630-5897
Farhad KosariBiomarker Discovery Program, Center of Individualized Medicine, Mayo Clinic, Rochester, MN, 55905, USA.
George VasmatzisBiomarker Discovery Program, Center of Individualized Medicine, Mayo Clinic, Rochester, MN, 55905, USA.
John C ChevilleBiomarker Discovery Program, Center of Individualized Medicine, Mayo Clinic, Rochester, MN, 55905, USA.
Andrew M SmithDepartment of Bioengineering, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA. smi@illinois.edu.ORCID http://orcid.org/0000-0002-0238-4816

Funding

Tissue microenvironment (TIMe) training programT32EB019944 · NIBIB · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI BHARGAVA, ROHIT, GASKINS, REX · 2016 to 2025
$1.9M
Translational Molecular and Cellular Imaging Technologies for Prostate Tumor PathologyR33CA196458 · NCI · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI BHARGAVA, ROHIT, CHEVILLE, JOHN C · 2016 to 2018
$1.2M
National Science Foundation (NSF) 0965918National Science Foundation (NSF) 1745812NCI NIH HHS R33 CA196458NIBIB NIH HHS T32 EB019944U.S. Department of Health & Human Services | National Institutes of Health (NIH) R33CA196458U.S. Department of Health & Human Services | National Institutes of Health (NIH) T32EB019944
6 · The paper itself

Abstract

Fluorescence in situ hybridization (FISH) is the primary technology used to image and count mRNA in single cells, but applications of the technique are limited by photophysical shortcomings of organic dyes. Inorganic quantum dots (QDs) can overcome these problems but years of development have not yielded viable QD-FISH probes. Here we report that macromolecular size thresholds limit mRNA labeling in cells, and that a new generation of compact QDs produces accurate mRNA counts. Compared with dyes, compact QD probes provide exceptional photostability and more robust transcript quantification due to enhanced brightness. New spectrally engineered QDs also allow quantification of multiple distinct mRNA transcripts at the single-molecule level in individual cells. We expect that QD-FISH will particularly benefit high-resolution gene expression studies in three dimensional biological specimens for which quantification and multiplexing are major challenges.

Indexed as

In Situ Hybridization, FluorescenceMolecular ImagingParticle SizeQuantum DotsRNA, MessengerRNA, Messenger

Identifiers

PMID30367061
PMCPMC6203793

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.