Evidence map›Paper›PMID 30366951›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2018

Structural consequences of hereditary spastic paraplegia disease-related mutations in kinesin.

Mandira Dutta, Michael R Diehl, José N Onuchic, Biman Jana

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.3field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 25 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Review
  5. Article
  6. Review
  7. Article
  8. Road-blocker HSP disease mutation disrupts pre-organization for ATP hydrolysis in kinesin through a second sphere control.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  9. Article
  10. Selective motor activation in organelle transport along axons.Nature reviews. Molecular cell biology · 2022
    Review
  11. Mechanistic basis of propofol-induced disruption of kinesin processivity.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  12. Article
  13. Review
  14. Article
  15. Going Too Far Is the Same as Falling ShortFrontiers in cellular neuroscience · 2019
    Review
  16. Defects in Axonal Transport in Inherited Neuropathies.Journal of neuromuscular diseases · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 2 countries.

Mandira DuttaDepartment of Physical Chemistry, Indian Association for the Cultivation of Science, Jadavpur, 700032 Kolkata, India.
Michael R DiehlDepartment of Bioengineering, Rice University, Houston, TX 77030.
José N OnuchicDepartment of Chemistry, Rice University, Houston, TX 77030; jonuchic@rice.edu pcbj@iacs.res.in.
Biman JanaDepartment of Physical Chemistry, Indian Association for the Cultivation of Science, Jadavpur, 700032 Kolkata, India; jonuchic@rice.edu pcbj@iacs.res.in.
Indian Association for the Cultivation of Science · INCenter for Theoretical Biological Physics · USRice University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A wide range of mutations in the kinesin motor Kif5A have been linked to a neuronal disorder called hereditary spastic paraplegia (HSP). The position of these mutations can vary, and a range of different motile behaviors have been observed, indicating that the HSP mutants can alter distinct aspects of kinesin mechanochemistry. While focusing on four key HSP-associated mutants, this study examined the structural and dynamic perturbations that arise from these mutations using a series of different computational methods, ranging from bioinformatics analyses to all-atom simulations, that account for solvent effects explicitly. We show that two catalytic domain mutations (R280S and K253N) reduce the microtubule (MT) binding affinity of the kinesin head domains appreciably, while N256S has a much smaller impact. Bioinformatics analysis suggests that the stalk mutation A361V perturbs motor dimerization. Subsequent integration of these effects into a coarse-grained structure-based model of dimeric kinesin revealed that the order-disorder transition of the neck linker is substantially affected, indicating a hampered directionality and processivity of kinesin. The present analyses therefore suggest that, in addition to kinesin-MT binding and coiled-coil dimerization, HSP mutations affecting motor stepping transitions and processivity can lead to disease.

Indexed as

Computational BiologyComputer SimulationHumansKinesinsModels, TheoreticalMutationProtein BindingSpastic Paraplegia, HereditaryKIF5A protein, humanKinesinshereditary spastic paraplegiaKif5Aorder–disorder transitionstructure-based modelthermodynamic integration

Identifiers

PMID30366951
PMCPMC6243270
OpenAlexW2898175848

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.