Evidence map›Paper›PMID 30365510›Full record

ArticlePloS one2018

Copy number variations and founder effect underlying complete IL-10Rβ deficiency in Portuguese kindreds.

Fabienne Charbit-Henrion, Bernadette Bègue, Anaïs Sierra, Sylvain Hanein, Marie-Claude Stolzenberg, Zhi Li, Sandra Pellegrini, Nicolas Garcelon, Marc Jeanpierre, Bénédicte Neven and 12 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed, 3 pooled it
0.7field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 3 syntheses or guidelines pooled it, 15 citations in OpenAlex.

  1. Pooled it
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  3. A Systematic Review of Monogenic Inflammatory Bowel Disease.Clinical gastroenterology and hepatology : the official clinical practice journal of the American Gastroenterological Association · 2022
    Pooled it
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 5 institutions in 3 countries.

Fabienne Charbit-HenrionINSERM, UMR1163 and Institut Imagine, Laboratory of Intestinal Immunity, Paris, France.ORCID 0000-0003-4615-3953
Bernadette BègueINSERM, UMR1163 and Institut Imagine, Laboratory of Intestinal Immunity, Paris, France.
Anaïs SierraINSERM, UMR1163 and Institut Imagine, Laboratory of Intestinal Immunity, Paris, France.
Sylvain HaneinParis Descartes University-Sorbonne Paris Cité, Paris, France.
Marie-Claude StolzenbergParis Descartes University-Sorbonne Paris Cité, Paris, France.
Zhi LiCytokine Signaling Unit, Institut Pasteur, INSERM 1221, Paris, France.
Sandra PellegriniCytokine Signaling Unit, Institut Pasteur, INSERM 1221, Paris, France.
Nicolas GarcelonParis Descartes University-Sorbonne Paris Cité, Paris, France.ORCID 0000-0002-3326-2811
Marc JeanpierreParis Descartes University-Sorbonne Paris Cité, Paris, France.
Bénédicte NevenParis Descartes University-Sorbonne Paris Cité, Paris, France.
Isabelle LogeDepartment of Paediatrics, Hôpital Charles-Nicolle, CHU Rouen, Rouen, France.
Capucine PicardParis Descartes University-Sorbonne Paris Cité, Paris, France.
Jérémie RosainParis Descartes University-Sorbonne Paris Cité, Paris, France.
Jacinta BustamanteParis Descartes University-Sorbonne Paris Cité, Paris, France.
Marc Le Lorc'hHistology, Embryology and Cytogenetics Unit, Necker-Enfants Malades Hospital, Assistance Publique des Hôpitaux de Paris (AP-HP), Paris, France.
Bénédicte PigneurINSERM, UMR1163 and Institut Imagine, Laboratory of Intestinal Immunity, Paris, France.ORCID 0000-0002-5324-9964
Alicia FernandesCentre of Biological Resources, Structure Fédérative de Recherche Necker, INSERM US24, CNRS UMS3633, Assistance Publique des Hôpitaux de Paris (AP-HP), and Institut Imagine, Paris, France.
GENIUS Group
Frédéric Rieux-LaucatParis Descartes University-Sorbonne Paris Cité, Paris, France.
Jorge Amil DiasGENIUS group, Paris, France.
Frank M RuemmeleINSERM, UMR1163 and Institut Imagine, Laboratory of Intestinal Immunity, Paris, France.
Nadine Cerf-BensussanINSERM, UMR1163 and Institut Imagine, Laboratory of Intestinal Immunity, Paris, France.
Délégation Paris 5 · FRInserm · FRCentre National de la Recherche Scientifique · FRHôpital Charles-Nicolle · FRHôpital Necker-Enfants Malades · FR

Funding

European Research Council 339407
6 · The paper itself

Abstract

Mutations in interleukin-10 receptor (IL-10R) genes are one cause of very early-onset inflammatory bowel disease with perianal lesions, which can be cured by hematopoietic stem cell transplantation. Using a functional test, which assesses responsiveness of peripheral monocytes to IL-10, we identified three unrelated Portuguese patients carrying two novel IL-10RB mutations. In the three patients, sequencing of genomic DNA identified the same large deletion of exon 3 which precluded protein expression. This mutation was homozygous in two patients born from consanguineous families and heterozygous in the third patient born from unrelated parents. Microsatellite analysis of the IL10RB genomic region revealed a common haplotype in the three Portuguese families pointing to a founder deletion inherited from a common ancestor 400 years ago. In the third patient, surface expression of IL-10R was normal but signaling in response to IL-10 was impaired. Complementary DNA sequencing and next-generation sequencing of IL10RB locus with custom-made probes revealed a ≈ 6 Kb duplication encompassing the exon 6 which leads to a frameshift mutation and a loss of the TYK2-interacting Box 2 motif. Altogether, we describe two novel copy number variations in IL10RB, one with founder effect and one preserving cell surface expression but abolishing signaling.

Indexed as

DNA Copy Number VariationsAllelesAmino Acid MotifsDNA, ComplementaryExonsFamily HealthFemaleFounder EffectGenome, HumanHaplotypesHeterozygoteHomozygoteHumansInfantInterleukin-10 Receptor beta SubunitLeukocytes, MononuclearDNA, ComplementaryIL10RB protein, humanInterleukin-10 Receptor beta Subunit

Identifiers

PMID30365510
PMCPMC6203366
OpenAlexW2898315137

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.