Evidence map›Paper›PMID 30365310›Full record

ArticleBiochemistry2018

Characterization of Natural Colibactin-Nucleobase Adducts by Tandem Mass Spectrometry and Isotopic Labeling. Support for DNA Alkylation by Cyclopropane Ring Opening.

Mengzhao Xue, Emilee Shine, Weiwei Wang, Jason M Crawford, Seth B Herzon

Abstract read
In one paragraph

Article in Biochemistry, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Structure and bioactivity of colibactin.Bioorganic & medicinal chemistry letters · 2020
    Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Mengzhao XueDepartment of Chemistry , Yale University , New Haven , Connecticut 06520 , United States.
Emilee ShineChemical Biology Institute , Yale University , West Haven , Connecticut 06516 , United States.ORCID 0000-0002-1290-2496
Weiwei WangDepartment of Molecular Biophysics and Biochemistry , Yale University School of Medicine , P.O. Box 208114, New Haven , Connecticut 06520 , United States.
Jason M CrawfordDepartment of Chemistry , Yale University , New Haven , Connecticut 06520 , United States.ORCID 0000-0002-7583-1242
Seth B HerzonDepartment of Chemistry , Yale University , New Haven , Connecticut 06520 , United States.ORCID 0000-0001-5940-9853

Funding

Structural and functional studies of colibactinR01CA215553 · NCI · YALE UNIVERSITY · PI Seth B. Herzon, Christian Jobin · 2018 to 2026
$5.5M
An Ultra-Performance Liquid Chromatography System to Support Metabolomics at Yale UniversityS10OD019967 · OD · YALE UNIVERSITY · PI LAM, TUKIET T · 2015 to 2015
$135k
NCI NIH HHS R01 CA215553NIH HHS S10 OD019967
6 · The paper itself

Abstract

Colibactins are genotoxic secondary metabolites whose biosynthesis is encoded in the clb gene cluster harbored by certain strains of gut commensal Escherichia coli. Using synthetic colibactin analogues, we previously provided evidence that colibactins alkylate DNA by addition of a nucleotide to an electrophilic cyclopropane intermediate. However, natural colibactin-nucleobase adducts have not been identified, to the best of our knowledge. Here we present the first identification of such adducts, derived from treatment of pUC19 DNA with clb

Indexed as

AlkylationCyclopropanesEscherichia coliIsotope LabelingPeptidesPolyketidesTandem Mass SpectrometrycolibactincyclopropaneCyclopropanesPeptidesPolyketides

Identifiers

PMID30365310
PMCPMC6997931

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.