Evidence map›Paper›PMID 30365304›Full record

ArticleBiochemistry2018

Biochemical Characterization and Structure-Based Mutational Analysis Provide Insight into the Binding and Mechanism of Action of Novel Aspartate Aminotransferase Inhibitors.

Melissa C Holt, Zahra Assar, Reza Beheshti Zavareh, Lin Lin, Justin Anglin, Oksana Mashadova, Daniel Haldar, Edouard Mullarky, Daniel M Kremer, Lewis C Cantley and 4 more

Abstract read
In one paragraph

Article in Biochemistry, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Frontiers in pharmacology · 2024
    Article
  6. The role of GOT1 in cancer metabolism.Frontiers in oncology · 2024
    Review
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 1 country.

Melissa C HoltCayman Chemical Company , 1180 East Ellsworth , Ann Arbor , Michigan 48108 , United States.
Zahra AssarCayman Chemical Company , 1180 East Ellsworth , Ann Arbor , Michigan 48108 , United States.
Reza Beheshti ZavarehCalifornia Institute for Biomedical Research , 11119 North Torrey Pines Road , La Jolla , California 92037 , United States.
Lin LinDepartment of Molecular and Integrative Physiology , University of Michigan Medical School , Ann Arbor , Michigan 48109 , United States.
Justin AnglinCalifornia Institute for Biomedical Research , 11119 North Torrey Pines Road , La Jolla , California 92037 , United States.
Oksana MashadovaMeyer Cancer Center, Department of Medicine , Weill Cornell Medical College , New York , New York 10065 , United States.
Daniel HaldarDepartment of Systems Biology , Harvard Medical School , Boston , Massachusetts 02215 , United States.
Edouard MullarkyMeyer Cancer Center, Department of Medicine , Weill Cornell Medical College , New York , New York 10065 , United States.
Daniel M KremerDepartment of Molecular and Integrative Physiology , University of Michigan Medical School , Ann Arbor , Michigan 48109 , United States.
Lewis C CantleyMeyer Cancer Center, Department of Medicine , Weill Cornell Medical College , New York , New York 10065 , United States.
Alec C KimmelmanDepartment of Radiation Oncology, Perlmutter Cancer Center , NYU Langone Medical Center , New York , New York 10016 , United States.
Adam J SteinCayman Chemical Company , 1180 East Ellsworth , Ann Arbor , Michigan 48108 , United States.
Luke L LairsonCalifornia Institute for Biomedical Research , 11119 North Torrey Pines Road , La Jolla , California 92037 , United States.ORCID 0000-0001-6701-996X
Costas A LyssiotisDepartment of Molecular and Integrative Physiology, Department of Internal Medicine, Division of Gastroenterology, and Rogel Cancer Center , University of Michigan , Ann Arbor , Michigan 48109 , United States.ORCID 0000-0001-9309-6141
Cayman Chemical (United States) · USTorrey Pines Institute For Molecular Studies · USUniversity of Michigan · US

Funding

XenograftP30CA046592 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI THEODORE S LAWRENCE · 1988 to 2026
$178.2M
Role of Phosphoinositides and Protein Kinases in the control of Cancer MetabolismR35CA197588 · NCI · WEILL MEDICAL COLL OF CORNELL UNIV · PI LEWIS C. CANTLEY · 2016 to 2026
$10.2M
Statistics and Bioinformatics Core - WangU24DK097153 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI BURANT, CHARLES F · 2012 to 2017
$10.1M
NCI NIH HHS P30 CA046592NCI NIH HHS R35 CA197588NIDDK NIH HHS U24 DK097153
6 · The paper itself

Abstract

Pancreatic cancer cells are characterized by deregulated metabolic programs that facilitate growth and resistance to oxidative stress. Among these programs, pancreatic cancers preferentially utilize a metabolic pathway through the enzyme aspartate aminotransferase 1 [also known as glutamate oxaloacetate transaminase 1 (GOT1)] to support cellular redox homeostasis. As such, small molecule inhibitors that target GOT1 could serve as starting points for the development of new therapies for pancreatic cancer. We ran a high-throughput screen for inhibitors of GOT1 and identified a small molecule, iGOT1-01, with in vitro GOT1 inhibitor activity. Application in pancreatic cancer cells revealed metabolic and growth inhibitory activity reflecting a promiscuous inhibitory profile. We then performed an in silico docking analysis to study inhibitor-GOT1 interactions with iGOT1-01 analogues that possess improved solubility and potency properties. These results suggested that the GOT1 inhibitor competed for binding to the pyridoxal 5-phosphate (PLP) cofactor site of GOT1. To analyze how the GOT1 inhibitor bound to GOT1, a series of GOT1 mutant enzymes that abolished PLP binding were generated. Application of the mutants in X-ray crystallography and thermal shift assays again suggested but were unable to formally conclude that the GOT1 inhibitor bound to the PLP site. Mutational studies revealed the relationship between PLP binding and the thermal stability of GOT1 while highlighting the essential nature of several residues for GOT1 catalytic activity. Insight into the mode of action of GOT1 inhibitors may provide leads to the development of drugs that target redox balance in pancreatic cancer.

Indexed as

MutationAspartate Aminotransferase, CytoplasmicBinding SitesCell ProliferationColonic NeoplasmsCrystallography, X-RayEnzyme InhibitorsHigh-Throughput Screening AssaysHumansMetabolomicsModels, MolecularPancreatic NeoplasmsProtein ConformationStructure-Activity RelationshipTumor Cells, CulturedAspartate Aminotransferase, CytoplasmicEnzyme InhibitorsGOT1 protein, human

Identifiers

PMID30365304
PMCPMC6487875
OpenAlexW2898094763

What OpenQuestion holds

Textmetadata
LicenceTDM
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.