ArticleGenome biology and evolution2018
Mitochondrial and Plastid Genomes from Coralline Red Algae Provide Insights into the Incongruent Evolutionary Histories of Organelles.
Article in Genome biology and evolution, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.
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16 citing papers in PubMed.
- Nucleomorph phylogenomics suggests a deep and ancient origin of cryptophyte plastids within Rhodophyta.The New phytologist · 2026Article
- Plastid genome structure and phylogenomics of the freshwater red algal order Batrachospermales (Rhodophyta).Journal of phycology · 2026Article
- Complete chloroplast genome sequence and phylogenetic analysis ofMitochondrial DNA. Part B, Resources · 2026Article
- Mitochondrial phylogenomics of eucheumatoids (Solieriaceae, Rhodophyta) from the Indo-Pacific.Journal of applied phycology · 2026Article
- Comparative structure and evolution of the organellar genomes of Padina usoehtunii (Dictyotales) with the brown algal crown radiation clade.BMC genomics · 2024Article
- Widespread incomplete lineage sorting and introgression shaped adaptive radiation in the Gossypium genus.Plant communications · 2024Article
- Characterization and organelle genome sequencing of Pyropia species from Myanmar.Scientific reports · 2023Article
- Characterizing conflict and congruence of molecular evolution across organellar genome sequences for phylogenetics in land plants.Frontiers in plant science · 2023Article
- Rampant nuclear-mitochondrial-plastid phylogenomic discordance in globally distributed calcifying microalgae.The New phytologist · 2022Article
- Article
- Sequencing the organelle genomes of Bougainvillea spectabilis and Mirabilis jalapa (Nyctaginaceae).BMC genomic data · 2022Article
- Organelle Phylogenomics and Extensive Conflicting Phylogenetic Signals in the Monocot Order Poales.Frontiers in plant science · 2021Article
- Article
- Recent advances in understanding mitochondrial genome diversity.F1000Research · 2020Review
- Expansion of phycobilisome linker gene families in mesophilic red algae.Nature communications · 2019Article
- De novo transcriptome assembly for four species of crustose coralline algae and analysis of unique orthologous genes.Scientific reports · 2019Article
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Authors and funding
13 authors.
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No grant is acknowledged in the PubMed record.
Abstract
Mitochondria and plastids are generally uniparentally inherited and have a conserved gene content over hundreds of millions of years, which makes them potentially useful phylogenetic markers. Organelle single gene-based trees have long been the basis for elucidating interspecies relationships that inform taxonomy. More recently, high-throughput genome sequencing has enabled the construction of massive organelle genome databases from diverse eukaryotes, and these have been used to infer species relationships in deep evolutionary time. Here, we test the idea that despite their expected utility, conflicting phylogenetic signal may exist in mitochondrial and plastid genomes from the anciently diverged coralline red algae (Rhodophyta). We generated complete organelle genome data from five coralline red algae (Lithothamnion sp., Neogoniolithon spectabile, Renouxia sp., Rhodogorgon sp., and Synarthrophyton chejuensis) for comparative analysis with existing organelle genome data from two other species (Calliarthron tuberculosum and Sporolithon durum). We find strong evidence for incongruent phylogenetic signal from both organelle genomes that may be explained by incomplete lineage sorting that has maintained anciently derived gene copies or other molecular evolutionary processes such as hybridization or gene flow during the evolutionary history of coralline red algae.
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